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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa16g034710.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
C2H2 |
| Protein Properties |
Length: 437aa MW: 49812.1 Da PI: 7.659 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa16g034710.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.1 | 0.00061 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C++Cg s s k++ ++Hi++H
Csa16g034710.1 52 YLCQYCGISRSKKYLITSHIKSH 74
56********************6 PP
|
| 2 | zf-C2H2 | 20 | 1.8e-06 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cg F+ + +Lk+H+++H
Csa16g034710.1 98 HTCQECGAEFKKPAHLKQHMQSH 120
79*******************99 PP
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| 3 | zf-C2H2 | 14 | 0.00015 | 126 | 150 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ C dC s++rk++L+rH+ tH
Csa16g034710.1 126 FACYvdDCASSYRRKDHLNRHLLTH 150
668888*****************99 PP
|
| 4 | zf-C2H2 | 16.6 | 2.2e-05 | 238 | 262 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ C+ Cgk F+ s+L++H ++
Csa16g034710.1 238 HACKeiGCGKAFKYLSQLQKHKILC 262
579999***************8766 PP
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| 5 | zf-C2H2 | 19.7 | 2.4e-06 | 329 | 354 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kC+ C+ +Fs snL++Hi+ H
Csa16g034710.1 329 FKCEveGCSSTFSKASNLQKHIKAvH 354
89********************9888 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 16 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 13.443 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.9E-7 | 98 | 125 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0015 | 98 | 120 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.21E-10 | 110 | 152 | No hit | No description |
| PROSITE profile | PS50157 | 9.889 | 126 | 155 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.2E-8 | 126 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.51 | 126 | 150 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 128 | 150 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 9.38E-5 | 153 | 181 | No hit | No description |
| PROSITE profile | PS50157 | 9.66 | 155 | 185 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.74 | 155 | 180 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 157 | 180 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 4.23E-6 | 233 | 260 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 6.1E-7 | 234 | 259 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 20 | 238 | 260 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.58 | 238 | 259 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.97 | 271 | 296 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 9.5E-4 | 273 | 294 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 273 | 296 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 22 | 299 | 320 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 4.37E-9 | 310 | 367 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 4.2E-8 | 310 | 351 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 12.902 | 329 | 359 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 3.8E-4 | 329 | 354 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 331 | 354 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 353 | 380 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 8.1 | 360 | 386 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 362 | 386 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 437 aa
Download sequence Send
to blast |
LYTKVRRLLE INPSSCVETI TESERESLRE REMVEEANVD VRASMKKDIR NYLCQYCGIS 60
RSKKYLITSH IKSHHQMELE EERDDMACEV EEETSSEHTC QECGAEFKKP AHLKQHMQSH 120
LLERPFACYV DDCASSYRRK DHLNRHLLTH KGKLFKCPME NCKSEFSVQG NVGRHVKKYH 180
SNDDNDKDNT GNVDSRKDKS GSGAGDKENI VNGDSANKDN TCNGDSQPSE CSTGQKPHAC 240
KEIGCGKAFK YLSQLQKHKI LCILKLDSVE AFCSEPGCMK YFTNEECLKA HIRSCHQHIN 300
CEICGSKHLK KNIKRHLRTH EEDSSPGEFK CEVEGCSSTF SKASNLQKHI KAVHEDIRPF 360
VCGFPGCGMR FAYKHVRNNH ENSGCHIYTC GDFVETDEDF TSRPRGGLKR KQVTAEMMVR 420
KRVMPPRFDS EGHETC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ630478 | 0.0 | AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D. |
| GenBank | AY054225 | 0.0 | AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds. |
| GenBank | AY066042 | 0.0 | AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds. |
| GenBank | AY186610 | 0.0 | AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds. |
