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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g034670.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 948aa MW: 99544.2 Da PI: 9.9167 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.2 | 1.4e-38 | 56 | 164 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + +s + + Csa16g034670.2 56 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 147 5789************************************************************999998874333333333322221...0222 PP TCP 89 ................k 89 + Csa16g034670.2 148 assplssfhttgmslyE 164 33444433333333431 PP | |||||||
2 | TCP | 125.4 | 5.9e-39 | 302 | 410 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + +s + + Csa16g034670.2 302 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 393 5789************************************************************999998874333333333322221...0222 PP TCP 89 ................k 89 + Csa16g034670.2 394 assplssfhttgmslyE 410 33444433333333431 PP | |||||||
3 | TCP | 125.3 | 6.6e-39 | 620 | 728 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s + +s + + Csa16g034670.2 620 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 711 5789************************************************************999998885333333333322221...0222 PP TCP 89 ................k 89 + Csa16g034670.2 712 assplssfhttgmslyE 728 33444433333333331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-35 | 62 | 182 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.031 | 62 | 116 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.8E-35 | 308 | 428 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.031 | 308 | 362 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.8E-35 | 626 | 746 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.031 | 626 | 680 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 948 aa Download sequence Send to blast |
MELHTNQNSG VSDSTLQLNS SDKHSIPFVG AMSTTTSSTS NSTSTSSGTA LAVVKPAAKK 60 PSKDRHTKVD GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIASTGTG 120 TIPANFSTLN ASLRGGGSTL FAQPSKSASS PLSSFHTTGM SLYEDSNGTN NGSSSVDPSR 180 KLLNSAAAPQ NAAAVFGFHH QMYPPIMSTE RAPSNLVKSY REDYFKEPSG SGAEPSGSSQ 240 KQGKRIMELH TNQNSGVSDS TLQLNSSDKH SIPFVGAMST TTSSTSNSTS TSSGTALAVV 300 KPAAKKPSKD RHTKVDGRGR RIRMPAMCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII 360 ASTGTGTIPA NFSTLNASLR GGGSTLFAQP SKSASSPLSS FHTTGMSLYE DSNGTNNGSS 420 SVDPSRKLLN SAAAPQNAAA VFGFHHQMYP PIMSTERAPS NLVKSYREDY FKEPSGSGAE 480 PSGSSQKQGQ FQDQELGQGG RAAATANVVP QPMWAVAPGT TNGGSAFWML PMSGSGGREQ 540 MQQQPGHQMW AFNPGNYPVG SGRVMELHTN QNSGVSDSTL QLNSSDKHSI PFVGAMSTTT 600 SSTSNSTSTS SGTALAVVKP AAKKPSKDRH TKVDGRGRRI RMPAMCAARV FQLTRELGHK 660 SDGETIEWLL QQAEPAIIAS TGTGTIPANF STLNASLRGG GSTLFAQPSK SASSPLSSFH 720 TTGMSLYEDS NGTNNGSSSV DPSRKLLNSA AAPQNAAAVF GFHHQMYPPI MSTERAPSNL 780 VKSYREDYFK EPSGSGAEPS GSSQKQGQFQ DQELGQGGRA AATANVVPQP MWAVAPGTTN 840 GGSAFWMLPM SGSGGREQMQ QQPGHQMWAF NPGNYPVGSG RVVTAPMGSM MLGGQQLGLG 900 VAESNMAAAM RGGSRGDGLA MTLDQHQHQH QEPNQTQASE NGGDDKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g034670.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471223.1 | 0.0 | PREDICTED: transcription factor TCP22-like | ||||
Swissprot | Q9C7G4 | 0.0 | TCP22_ARATH; Transcription factor TCP22 | ||||
TrEMBL | R0I9T3 | 0.0 | R0I9T3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010471223.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 1e-157 | TCP family protein |
Publications ? help Back to Top | |||
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