PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g034670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 954aa    MW: 100317 Da    PI: 9.9879
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g034670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.6e-3956164289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa16g034670.1  56 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 147
                     5789************************************************************999998885333333333322221...0222 PP

             TCP  89 ................k 89 
                                     +
  Csa16g034670.1 148 assplssfhttgmslyE 164
                     33444433333333331 PP
2TCP125.36.7e-39311419289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa16g034670.1 311 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 402
                     5789************************************************************999998885333333333322221...0222 PP

             TCP  89 ................k 89 
                                     +
  Csa16g034670.1 403 assplssfhttgmslyE 419
                     33444433333333331 PP
3TCP125.36.7e-39626734289
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas....nsssg... 88 
                     +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s    +   +   
  Csa16g034670.1 626 PAAKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGStlfaQ---Psks 717
                     5789************************************************************999998885333333333322221...0222 PP

             TCP  89 ................k 89 
                                     +
  Csa16g034670.1 718 assplssfhttgmslyE 734
                     33444433333333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3562182IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03162116IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-35317437IPR005333Transcription factor, TCP
PROSITE profilePS5136928.031317371IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-35632752IPR005333Transcription factor, TCP
PROSITE profilePS5136928.031632686IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MELHTNQNSG VSDSTLQLNS SDKHSIPFVG AMSTTTSSTS NSTSTSSGTA LAVVKPAAKK  60
PSKDRHTKVD GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE PAIIASTGTG  120
TIPANFSTLN ASLRGGGSTL FAQPSKSASS PLSSFHTTGM SLYEDSNGTN NGSSSVDPSR  180
KLLNSAAAPQ NAAAVFGFHH QMYPPIMSTE RAPSNLVKSY REDYFKEPSG SGAEPSGSSQ  240
KQGKRIGLFF FFLEKMELHT NQNSGVSDST LQLNSSDKHS IPFVGAMSTT TSSTSNSTST  300
SSGTALAVVK PAAKKPSKDR HTKVDGRGRR IRMPAMCAAR VFQLTRELGH KSDGETIEWL  360
LQQAEPAIIA STGTGTIPAN FSTLNASLRG GGSTLFAQPS KSASSPLSSF HTTGMSLYED  420
SNGTNNGSSS VDPSRKLLNS AAAPQNAAAV FGFHHQMYPP IMSTERAPSN LVKSYREDYF  480
KEPSGSGAEP SGSSQKQGQF QDQELGQGGR AAATANVVPQ PMWAVAPGTT NGGSAFWMLP  540
MSGSGGREQM QQQPGHQMWA FNPGNYPVGS GRVVTAPMGS MMLGXANKSE YDKHSIPFVG  600
AMSTTTSSTS NSTSTSSGTA LAVVKPAAKK PSKDRHTKVD GRGRRIRMPA MCAARVFQLT  660
RELGHKSDGE TIEWLLQQAE PAIIASTGTG TIPANFSTLN ASLRGGGSTL FAQPSKSASS  720
PLSSFHTTGM SLYEDSNGTN NGSSSVDPSR KLLNSAAAPQ NAAAVFGFHH QMYPPIMSTE  780
RAPSNLVKSY REDYFKEPSG SGAEPSGSSQ KQGQFQDQEL GQGGRAAATA NVVPQPMWAV  840
APGTTNGGSA FWMLPMSGSG GREQMQQQPG HQMWAFNPGN YPVGSGRVVT APMGSMMLGG  900
QQLGLGVAES NMAAAMRGGS RGDGLAMTLD QHQHQHQEPN QTQASENGGD DKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g034670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471223.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-175TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T30.0R0I9T3_9BRAS; Uncharacterized protein
STRINGXP_010471223.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-151TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]