PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g031600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 320aa    MW: 34890.2 Da    PI: 10.9535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g031600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-14149193347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   Csa16g031600.1 149 PWTEDEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 193
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.5E-44764IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.1254963IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.687142198IPR017930Myb domain
SuperFamilySSF466892.8E-16144198IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-16145196IPR006447Myb domain, plants
SMARTSM007179.8E-11146196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10148193IPR009057Homeodomain-like
CDDcd001671.61E-9149194No hitNo description
PfamPF002493.2E-11149193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
LFIPNLNLSF LLFLFTFFFS SPKNISLSLY LRSSSVLLSS RAASMSRSCS QCGNNGHNSR  60
TCPTEITTTG DNNNNNNGGA GEKGIMLFGV RVTEAPSRSV RKTVSMNNLI QLDQTLDSNG  120
PVEDGGGYAS DDVVHASGSR NRERKRGTPW TEDEHRLFLT GLHKVGKGDW RGISRNFVKT  180
RTPTQVASHA QKYFLRRTNQ NRRRRRSSLF DITPDSFIES IQEESQMQTP LEGIHLGSKL  240
NRSVPVPVPI PIPPSRRMAG LNLSKKAPAT TTEKMFPLSL NLSSTSSSSS SNEQKARGGS  300
RASGFEAMSS NGDSIMGVA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g031600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471001.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ9LVS07e-58KUA1_ARATH; Transcription factor KUA1
TrEMBLR0IBR71e-134R0IBR7_9BRAS; Uncharacterized protein
STRINGXP_010471001.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97912636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-104MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]