PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g030930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 347aa MW: 39645.6 Da PI: 8.5532 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.5 | 5.5e-21 | 13 | 53 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 n rq t++kR++gi+KKA+ELS+LCd++v++++fs+tgk Csa16g030930.1 13 NMNARQCTYAKRKHGIMKKAKELSILCDIDVLLLMFSPTGK 53 6778***********************************98 PP | |||||||
2 | K-box | 17.3 | 2e-07 | 127 | 199 | 20 | 93 |
K-box 20 elakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +++ L+ +++ + + R + +L+++ ++ +LqqLe+ L sl +i ++K + q ++l e ++q +n++ Csa16g030930.1 127 KVRFLRTQLSDIHT--RLSCWTNLDNInNVDDLQQLENSLRLSLAQISARKASIPQHQQQQLMSSECKNQVKNHK 199 44444444444443..567778888873589*********************99999988888888777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-22 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.063 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.25E-20 | 2 | 53 | No hit | No description |
PRINTS | PR00404 | 1.8E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-17 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.715 | 114 | 244 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRVKLKIMK LRNMNARQCT YAKRKHGIMK KAKELSILCD IDVLLLMFSP TGKASLCLGK 60 NSIGEVIAKF AQLTPQERAK RSFCLRLDRK LENLEALKKM FMKLDHDVDI SEFLDRRTPT 120 VEVLSEKVRF LRTQLSDIHT RLSCWTNLDN INNVDDLQQL ENSLRLSLAQ ISARKASIPQ 180 HQQQQLMSSE CKNQVKNHKT EIDIDFGMEN FSWVRTTDEN MNVLIKEENP ILHLHQMYRD 240 ITCCASSSLG NYSGLSTPKL ETGSIPGIPA DPSLQFGNPS FLNDQKLQKL AEWNLLGSPA 300 DYYFSQIFEA SHKPQLGGNK YNWTSPETLP YVAIFDDPLF FWPSEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g030930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB115013 | 1e-98 | AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470943.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X1 | ||||
Refseq | XP_010470944.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X1 | ||||
Swissprot | Q1PFA4 | 3e-75 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A178WKN7 | 0.0 | A0A178WKN7_ARATH; AGL94 | ||||
STRING | XP_010470943.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14956 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 0.0 | AGAMOUS-like 94 |
Publications ? help Back to Top | |||
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