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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa16g030470.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
SBP |
Protein Properties |
Length: 422aa MW: 47430.4 Da PI: 6.6905 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa16g030470.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 134.2 | 4e-42 | 140 | 215 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
Cqv gC+ dls+ k+yh+rh+vC++hsk++vv+v+gleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
Csa16g030470.1 140 CQVYGCNLDLSSSKDYHKRHRVCDTHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPA 215
**************************************************************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 422 aa
Download sequence Send
to blast |
MDSWSYGRSV FLGNGTLLPS DSFAENRNFG QSLSNRLEND DDDDHHHVLI SDLAGDSNGF 60 SAVSIRKVVP SNLLHEEVEE EEEKQSSSSS KFSSQELSRI DFKLRNLLDL GNNDDTSSSG 120 FALPAKKPRA SNLCSQKPLC QVYGCNLDLS SSKDYHKRHR VCDTHSKTSV VIVNGLEQRF 180 CQQCSRFHFL SEFDDGKRSC RRRLAGHNER RRKPAFYYLP GKRHKLLRTS QGVVGNKFLE 240 NSSVNDFSLV LPEEFPGTFL YRVIDEHDHH ASSRLVSFKD EPTCSMFPAV GQNSSRIYES 300 KPAVHSPEVS SIWDLHESAS RSTCALSLLS AQSQQQHIPE TPNTTFSITQ PNHSPVDFNQ 360 MERLWIDPGK TNPAGSSSCT VKGSSTVDLL QLSSHLQRIE QQRNFTDDVK QEYNELYFTG 420 S*
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Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF370612 | 0.0 | AF370612.1 Arabidopsis thaliana similar to squamosa-promoter binding protein 1 isolog gi|1707009 (F4N2.13) mRNA, complete cds. |
GenBank | AJ011643 | 0.0 | AJ011643.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 6. |
GenBank | AK227964 | 0.0 | AK227964.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 6, complete cds, clone: RAFL14-51-E10. |
GenBank | BT006436 | 0.0 | BT006436.1 Arabidopsis thaliana At1g69170 gene, complete cds. |