PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 197aa MW: 22098.5 Da PI: 5.1421

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g030230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	60.7	2.9e-19	113	165	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +lkr rr+++NRe+ArrsR+RK++++ Le v++L++eN++L k+l +++ Csa16g030230.1 113 DLKRIRRMYSNRESARRSRRRKQEYLVDLESQVDSLKGENSTLYKQLIDATQQ 165 79*****************************************9887655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-16	111	175	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.07	113	159	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-16	113	159	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.3E-13	114	164	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-14	115	165	No hit	No description
PROSITE pattern	PS00036	0	118	133	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
SFCCLSCSYG CCLCLDQDPE IVVRFLVLWL QDYTSELRDS LLWSEGLIPT GRFRDAQSSI 60 CENLSADSPV SANKPEARGG ARRTTSASSH DHSDEEDAET EAGQSEMTND PNDLKRIRRM 120 YSNRESARRS RRRKQEYLVD LESQVDSLKG ENSTLYKQLI DATQQFRSAG TNNRVLKSDV 180 ETLRVKVSSI TCSLNL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	134	RRSRRRKQ
2	129	134	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g030230.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF310223	0.0	AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds.
GenBank	AK226873	0.0	AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010424288.1	1e-100	PREDICTED: basic leucine zipper 9-like
Swissprot	Q9FUD3	2e-98	BZIP9_ARATH; Basic leucine zipper 9
TrEMBL	A0A178UG19	5e-96	A0A178UG19_ARATH; BZO2H2
STRING	XP_010424288.1	1e-100	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6370	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	7e-78	basic leucine zipper 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ortiz-Espín A, et al. Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions. J. Exp. Bot., 2017. 68(5): p. 1025-1038 [PMID:28184497] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]