PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g028970.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 364aa MW: 40213.8 Da PI: 6.2915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g028970.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	5.1e-14	173	219	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L Csa16g028970.1 173 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 219 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.85	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	173	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-14	174	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	174	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-12	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.25E-5	183	222	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.2E-4	259	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MCGKKEEEED SSRAMNNIQN YQNDLFFHQV ISHHHRHHHD PSQSETFGAS GNVGSGFTIF 60 SQDSVSPIWS LPPATSIQPP FDQFPPPSST PASFYGSFFN RNRAHHGQGL QFGYEGFGGA 120 TSAAHHHHEQ LRILSEALGP VVQAGSGPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER 180 RRRERINNHL AKLRSILPNT TKTDKASLLA EVIQHVKELK RETLVISETN LVPTESDELT 240 VAFTEEEETG DGRFVIKASL CCEDRSDLLP DMIKTLKAMR LKTLKAEITT VGGRVKNVLF 300 VTGEESSGEE VEEEYCIGTI EEALKALMEK SNVEESSSSG NAKRQRMSSH NTITIVEQQH 360 HQR*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MCGKKEEEED SSRAMNNIQN YQNDLFFHQV ISHHHRHHHD PSQSETFGAS GNVGSGFTIF  60
SQDSVSPIWS LPPATSIQPP FDQFPPPSST PASFYGSFFN RNRAHHGQGL QFGYEGFGGA  120
TSAAHHHHEQ LRILSEALGP VVQAGSGPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER  180
RRRERINNHL AKLRSILPNT TKTDKASLLA EVIQHVKELK RETLVISETN LVPTESDELT  240
VAFTEEEETG DGRFVIKASL CCEDRSDLLP DMIKTLKAMR LKTLKAEITT VGGRVKNVLF  300
VTGEESSGEE VEEEYCIGTI EEALKALMEK SNVEESSSSG NAKRQRMSSH NTITIVEQQH  360
HQR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g028970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY072161	0.0	AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBank	AY122983	0.0	AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470846.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	0.0	BH030_ARATH; Transcription factor bHLH30
TrEMBL	R0IF05	0.0	R0IF05_9BRAS; Uncharacterized protein
STRING	XP_010470846.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]