PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 139aa    MW: 16265.5 Da    PI: 10.6008
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.23.5e-1345100358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     + ++ rrk +NRe+ArrsR RK+ ++eeL     +L +eNk L +el + k+ ++k
  Csa16g028870.1  45 DERKRRRKVSNRESARRSRMRKRRRMEELWSMLVQLINENKCLVDELGRAKEGYDK 100
                     5577899*******************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-103896No hitNo description
SMARTSM003381.9E-1343107IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.69145108IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.29E-94796No hitNo description
PfamPF001702.5E-1047100IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAGFVYNLPS ANPSPQSFFK TFGDRVPLVN LPATSDESNR SAEDDERKRR RKVSNRESAR  60
RSRMRKRRRM EELWSMLVQL INENKCLVDE LGRAKEGYDK VIEENMKLRE ENSKSRKMIG  120
EIRLNRFLNV DGDKIWTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14968RRKVSNRESARRSRMRKRRR
26468RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935281e-121AB493528.1 Arabidopsis thaliana At1g68880 mRNA for hypothetical protein, partial cds, clone: RAAt1g68880.
GenBankAC0116651e-121AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119141e-121AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF4006211e-121AF400621.1 Arabidopsis thaliana transcription factor-like protein bZIP8 mRNA, complete cds.
GenBankBT0248171e-121BT024817.1 Arabidopsis thaliana At1g68880 gene, complete cds.
GenBankCP0026841e-121CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470838.12e-96PREDICTED: basic leucine zipper 8-like
SwissprotQ9CA461e-76BZIP8_ARATH; Basic leucine zipper 8
TrEMBLA0A178WI502e-73A0A178WI50_ARATH; BZIP
STRINGXP_010470838.19e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.14e-66basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]