PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 471aa MW: 52943.6 Da PI: 6.5108

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g028670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	184	225	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 + rr+++NReAAr+sR+RKka++++Le+ + ++Le+e + Csa16g028670.1 184 RTLRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEEELE 225 5679***********************984445566666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-8	175	230	No hit	No description
SMART	SM00338	2.2E-5	180	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.266	182	226	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	183	225	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.78E-7	184	229	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-27	269	342	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEAIDLSPNV TIASSANLHY 60 TTFDTGMDCG GLRERLEVED ECLDTGQLVY QKGTRLVGGG GGEVNGSLEN WCDSVSAMAD 120 NSQHTDTSTD IDTDDKTQVL FLCLLRLNHL LKIRLKDSLN GGHQGMVLAT NCSDQSKVKS 180 SEQRTLRRLA QNREAARKSR LRKKAYVQQL ENSRVRLAQL EEELERVRQQ GSVVESGVTA 240 NHTHLPAGNG VFSFELEYTR WKEEHQRLIN DLRSGVNSQL GDNELRMLVD AVMSHYNEIF 300 RLKGIGTKVD VFHMLSGMWK TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL 360 QQSSQQTEDA LSQGMEALQQ SLLETLSSAS MGPNSSANVA DYMGHMAMPM GKLGTLENFL 420 RQADLLRQQT LQQLHRILTT RQAARAFLVI HDYISRLRAL SSLWLARPRD *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MQSSFKTVPF NPDFYSQSSY FFRGDTCLEE FHQPVNGFHH DEAIDLSPNV TIASSANLHY  60
TTFDTGMDCG GLRERLEVED ECLDTGQLVY QKGTRLVGGG GGEVNGSLEN WCDSVSAMAD  120
NSQHTDTSTD IDTDDKTQVL FLCLLRLNHL LKIRLKDSLN GGHQGMVLAT NCSDQSKVKS  180
SEQRTLRRLA QNREAARKSR LRKKAYVQQL ENSRVRLAQL EEELERVRQQ GSVVESGVTA  240
NHTHLPAGNG VFSFELEYTR WKEEHQRLIN DLRSGVNSQL GDNELRMLVD AVMSHYNEIF  300
RLKGIGTKVD VFHMLSGMWK TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL  360
QQSSQQTEDA LSQGMEALQQ SLLETLSSAS MGPNSSANVA DYMGHMAMPM GKLGTLENFL  420
RQADLLRQQT LQQLHRILTT RQAARAFLVI HDYISRLRAL SSLWLARPRD *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g028670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	0.0	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	0.0	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470818.1	0.0	PREDICTED: transcription factor PERIANTHIA isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	R0I710	0.0	R0I710_9BRAS; Uncharacterized protein
STRING	XP_010470818.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]