PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g028570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 339aa    MW: 36748 Da    PI: 4.4891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g028570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-17130176252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     +  GVr++k +g+W+AeIr+p+      +r++lg+f+t eeAaka++  + +
  Csa16g028570.1 130 KPVGVRQRK-WGKWAAEIRHPV----AkTRIWLGTFDTLEEAAKAYDLKKIE 176
                     789*****9.**********64....35*******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.30E-22129177No hitNo description
PfamPF008474.9E-12130177IPR001471AP2/ERF domain
SMARTSM003804.1E-18130190IPR001471AP2/ERF domain
PROSITE profilePS5103218.769130189IPR001471AP2/ERF domain
PRINTSPR003675.0E-8131142IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-16132177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-21133177IPR001471AP2/ERF domain
PRINTSPR003675.0E-8153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVEVRKELSL SGTTTTSGGE MKKRAKRNTL SSSSSSSLPQ ETQPLRKVRI IVNDPYATDD  60
SSSDEEEFRI VPKPRKVKRI VREINFPSME VVSEQPSQSS SQDSTKTVSK KAAAGSSSAT  120
PACPKVLTKK PVGVRQRKWG KWAAEIRHPV AKTRIWLGTF DTLEEAAKAY DLKKIEFDAL  180
VAKPAVSSSE TSQCSRSSPV APVEQDDTSA SALTCVNKTT VEVSKEEIVA PTPTPNADGG  240
NKEVLFDFDF TNLQIPDLGF FADGPNGNDL DFYCLLNDDQ FDGFGLLDDI QGFEDDGPSE  300
LPDFDFADVE ELADSSFGFL DQLAPLNIGC PLKSFAAS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g028570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470806.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_010470807.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_010470808.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA271e-158EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLR0GF660.0R0GF66_9BRAS; Uncharacterized protein
STRINGXP_010470806.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-122ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]