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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa16g028540.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
CO-like |
Protein Properties |
Length: 570aa MW: 64610.1 Da PI: 5.1863 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa16g028540.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.9 | 7.6e-07 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C ++ +lC+ C + H+ H++v
Csa16g028540.1 14 ARACDSCVKRRARWYCAADDAFLCHCCDGSVHSAnplarrHERV 57
578*****************************657888888876 PP
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2 | CCT | 67.8 | 2.8e-23 | 520 | 563 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Csa16g028540.1 520 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 563
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 570 aa
Download sequence Send
to blast |
MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHCC DGSVHSANPL ARRHERVRLK 60 TASTGKHRHA SSSSPPHETT WHQGFTRKAR TPRGGKKRHT MVFHDLVPEM STEDQTESYE 120 VEGQLIFEVP VMNPMVEEQC FNESVETKIE VPMMPVCFKS SDEEDEDNAE SCLXCCVKRR 180 ARWYCAADDA FLCHCCDGSV HSANPLARRH ERVRLKTAST GKHRHASSSS PPHETTWHQG 240 FTRKARTPRG GKKRHTMVFH DLVPEMSTED QTESYEVEGQ LIFEVPVMNP MVEEQCFNES 300 VETKIEVPMM PVCFKSSDEE DEDNAESCLN GLFPTDMELA QFTADVETLL GGGIERDFYP 360 TEDLGLGEML KIEKEEVEEE EGVATRDVCD LNEVDETSPF EISFDYEYAS KSTYEEEEEE 420 DEKEDVMKNV IDMGVNEMSG KIKEENKEKA LMLRLDYESV LSTWGGQGIP WTAQEPSEID 480 LDMVCCPTDS MGESGADQAH HYNHFRGLGL HMGEAGDGGR EARVSRYREK RRTRLFSKKI 540 RYEVRKLNAE KRPRMKGRFV KRSSIAAAH*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 530 | 546 | RRTRLFSKKIRYEVRKL |