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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa16g027910.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
M-type_MADS |
Protein Properties |
Length: 248aa MW: 27974 Da PI: 10.5704 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa16g027910.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 71.1 | 9.8e-23 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
+++ +++r +++ kR+++++KKA ELSvLC++ev+vi ++ +g l++ys
Csa16g027910.1 10 SSSHQIQRATSLMKRQATVFKKARELSVLCAIEVCVICYGADGALKTYS 58
78999*******************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MKTTKPASSS SSHQIQRATS LMKRQATVFK KARELSVLCA IEVCVICYGA DGALKTYSEE 60 RDKVEAIARR YVALSETKRR KRSVDLDRSL ANSNKKKKLV RPRRVSKFPV WDPRFDNYSG 120 EQLTGLVQSL ERNLTRLQDR FRDLVEVQKQ RNMNQGPSSS TRNTINQYLL PQQQQQPNQF 180 SMFLLNHENG NVAQIPLGLM NQGRQSVPMI PPELLMNPDV GNYNSGSLGA FGPPLYDLSQ 240 PLFSLSV*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 79 | 97 | RKRSVDLDRSLANSNKKKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |