 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa16g027610.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
ARR-B |
| Protein Properties |
Length: 586aa MW: 65645.7 Da PI: 5.1504 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa16g027610.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 82.4 | 5e-26 | 253 | 307 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+r++W+ eLH++Fv+av+q+G +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
Csa16g027610.1 253 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 307
68****************************************************8 PP
|
| 2 | Response_reg | 80 | 8.1e-27 | 72 | 178 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G
Csa16g027610.1 72 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVMKGVQHG 164
89*********************.***************999999**********************5543.7********************** PP
ESEEEESS--HHHH CS
Response_reg 94 akdflsKpfdpeel 107
a d+l Kp+ ++el
Csa16g027610.1 165 ACDYLLKPIRMKEL 178
*********99998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0010082 | Biological Process | regulation of root meristem growth |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 586 aa
Download sequence Send
to blast |
HGDRYLNNAE IFGLCSFIAK QKPPLTTFPK KEHSPLSHLS LFLSSSVSVS LSFLFLPANM 60
EKGGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI 120
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETSRVMKG VQHGACDYLL KPIRMKELKI 180
IWQHVLRKKL QEVRDIEGCG YEGGTDWITR YDEAHFLGGG EDVSFCKKRK DFDFEKKLLL 240
QDESDPSSSS SKKARVVWSF ELHQKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS 300
HLQKYRLYLS RLEKEKELKC YSGGVKSIDS SPKDAEVNSG HQSPGKSSFV FSGGIFQKAT 360
ETDPKPLASA SLSDPNTDVI MPPKTKKTRI GFDPPISSPA FDSLLPWNDV PEVLESKPVL 420
YENSFLQQQP LPSQSSYVAN SAPAIMEEEM KPPYETPVGG SSVNIDEFLM PQDKIPTVTI 480
QDLDPSALSS MKLQEFSSNV TNNTEAILRS WELPESNHSA SLDTDLDLSW LQGERFLANT 540
GLQFQDYSSS PSFLSELPPH LWYGNERLPD PDEYSFMVDQ GLFIS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK228216 | 0.0 | AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10. |
