PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g027100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 972aa MW: 108189 Da PI: 5.2655 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.7 | 9.3e-53 | 11 | 127 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e+ iL+n+e+ +lt +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+ Csa16g027100.1 11 YQEaQTRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105 56769****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e+ivlvhy++v Csa16g027100.1 106 RRIYWMLDPEYEHIVLVHYRDV 127 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.375 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.7E-80 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.2E-46 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.2E-7 | 407 | 494 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.13E-16 | 409 | 492 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.8E-7 | 409 | 492 | IPR002909 | IPT domain |
CDD | cd00102 | 2.45E-7 | 409 | 493 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.6E-15 | 573 | 695 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.459 | 602 | 694 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.06E-15 | 603 | 697 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.12E-14 | 607 | 694 | No hit | No description |
Pfam | PF12796 | 1.6E-7 | 625 | 695 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0065 | 635 | 664 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.499 | 635 | 667 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1600 | 674 | 703 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 20 | 752 | 774 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.76E-8 | 753 | 861 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.169 | 753 | 781 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.19 | 755 | 772 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.51 | 809 | 831 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 810 | 839 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0042 | 811 | 830 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 4.2E-4 | 832 | 854 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.102 | 833 | 857 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.9E-4 | 835 | 854 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 972 aa Download sequence Send to blast |
MQSEYDISTL YQEAQTRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF 60 RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV 120 LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD 180 LEGSASSSEL GQALKKLKEQ LSIGDEHVDS VVQPYIQPES LDSLQFLECS NDMDHFAQPP 240 TTVYQRPENN RLERCYGGNF GAQYHAKNDS NRLERCYGGY VGAQYHSSNL MLVKNDSGGT 300 GGSGDQGSES WKEVLEACAL NSEESTPSSA KGLLAGLQED SNWSYSNQVD QSTLLFPRDL 360 GSFKVPASYS ALVAPENNGE YCRMMDDGEL GLPFEQEMSL TGACNQKFTI QDISPEWGFA 420 NETTKVIIIG SFLCDSAESM WCCMFGSSEV PCEIIKEGVI RCEAPSCGPG KVNLCITSGD 480 GLSCSEIREF EYHGKPDDTC CLKCSRPQSS DMSISPDEVI ILVGLVQTLL SDRSSEGESN 540 SELGNDKLLK KLNADDDQWT HVIAEVLNGS SSSTKTVDWL LQELLKDKLD AWLSSRFQMS 600 KKEQGIIHMI ADLGFEWALY PILDHGVSVD FRDIKGWSAL HWAARFGSEK MVAALIASGA 660 SAGAVTDPTQ QDPNGKTAAS IAASYGHKGI AGYLSEVALT NHLSSLTLEE TEISKDSAQV 720 QAEITVNSIS EPGPSGSEDQ LSLEKTLAAV RNAAQAATRI QAAFRAHSFR KRKQREAAMA 780 ACLQEYGIYC EDIEGISAMS KRTFGKVKNY HSAALSIQKK YRGYKGRKEF LELRQKVVKI 840 QALVRGYQTR KHYRVICWAV GILDKVVLRW RRKGVGLRGF RPDVETTEDS EDEDILKVFR 900 KQKVDGAVNE AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLLG DDDDGLFDIA 960 DMEFDSLFTL P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g027100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 0.0 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470634.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4 isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | R0GG07 | 0.0 | R0GG07_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470633.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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