PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g027100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CAMTA

Protein Properties

Length: 972aa MW: 108189 Da PI: 5.2655

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g027100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.7	9.3e-53	11	127	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwlk+ e+ iL+n+e+ +lt +++rp+sgsl+L+nr+++++frkDG++w+kk+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+ Csa16g027100.1 11 YQEaQTRWLKPPEVQFILQNHERLTLTDVAPQRPTSGSLFLFNRRVLKFFRKDGHQWRKKRDGRAIAEAHERLKVGNAEALTCYYAHGEHDPTFR 105 56769**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rr+yw+L+ e+e+ivlvhy++v Csa16g027100.1 106 RRIYWMLDPEYEHIVLVHYRDV 127 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.375	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.7E-80	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.2E-46	13	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.2E-7	407	494	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.13E-16	409	492	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.8E-7	409	492	IPR002909	IPT domain
CDD	cd00102	2.45E-7	409	493	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.6E-15	573	695	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.459	602	694	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.06E-15	603	697	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.12E-14	607	694	No hit	No description
Pfam	PF12796	1.6E-7	625	695	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0065	635	664	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.499	635	667	IPR002110	Ankyrin repeat
SMART	SM00248	1600	674	703	IPR002110	Ankyrin repeat
SMART	SM00015	20	752	774	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	8.76E-8	753	861	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.169	753	781	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.19	755	772	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.51	809	831	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.627	810	839	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0042	811	830	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.2E-4	832	854	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.102	833	857	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.9E-4	835	854	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MQSEYDISTL YQEAQTRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF 60 RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV 120 LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD 180 LEGSASSSEL GQALKKLKEQ LSIGDEHVDS VVQPYIQPES LDSLQFLECS NDMDHFAQPP 240 TTVYQRPENN RLERCYGGNF GAQYHAKNDS NRLERCYGGY VGAQYHSSNL MLVKNDSGGT 300 GGSGDQGSES WKEVLEACAL NSEESTPSSA KGLLAGLQED SNWSYSNQVD QSTLLFPRDL 360 GSFKVPASYS ALVAPENNGE YCRMMDDGEL GLPFEQEMSL TGACNQKFTI QDISPEWGFA 420 NETTKVIIIG SFLCDSAESM WCCMFGSSEV PCEIIKEGVI RCEAPSCGPG KVNLCITSGD 480 GLSCSEIREF EYHGKPDDTC CLKCSRPQSS DMSISPDEVI ILVGLVQTLL SDRSSEGESN 540 SELGNDKLLK KLNADDDQWT HVIAEVLNGS SSSTKTVDWL LQELLKDKLD AWLSSRFQMS 600 KKEQGIIHMI ADLGFEWALY PILDHGVSVD FRDIKGWSAL HWAARFGSEK MVAALIASGA 660 SAGAVTDPTQ QDPNGKTAAS IAASYGHKGI AGYLSEVALT NHLSSLTLEE TEISKDSAQV 720 QAEITVNSIS EPGPSGSEDQ LSLEKTLAAV RNAAQAATRI QAAFRAHSFR KRKQREAAMA 780 ACLQEYGIYC EDIEGISAMS KRTFGKVKNY HSAALSIQKK YRGYKGRKEF LELRQKVVKI 840 QALVRGYQTR KHYRVICWAV GILDKVVLRW RRKGVGLRGF RPDVETTEDS EDEDILKVFR 900 KQKVDGAVNE AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLLG DDDDGLFDIA 960 DMEFDSLFTL P*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MQSEYDISTL YQEAQTRWLK PPEVQFILQN HERLTLTDVA PQRPTSGSLF LFNRRVLKFF  60
RKDGHQWRKK RDGRAIAEAH ERLKVGNAEA LTCYYAHGEH DPTFRRRIYW MLDPEYEHIV  120
LVHYRDVSDR EEGYQTSGQV YQFAPVPATQ NASYNHYIGD STDINQHSST SPGTAEVISD  180
LEGSASSSEL GQALKKLKEQ LSIGDEHVDS VVQPYIQPES LDSLQFLECS NDMDHFAQPP  240
TTVYQRPENN RLERCYGGNF GAQYHAKNDS NRLERCYGGY VGAQYHSSNL MLVKNDSGGT  300
GGSGDQGSES WKEVLEACAL NSEESTPSSA KGLLAGLQED SNWSYSNQVD QSTLLFPRDL  360
GSFKVPASYS ALVAPENNGE YCRMMDDGEL GLPFEQEMSL TGACNQKFTI QDISPEWGFA  420
NETTKVIIIG SFLCDSAESM WCCMFGSSEV PCEIIKEGVI RCEAPSCGPG KVNLCITSGD  480
GLSCSEIREF EYHGKPDDTC CLKCSRPQSS DMSISPDEVI ILVGLVQTLL SDRSSEGESN  540
SELGNDKLLK KLNADDDQWT HVIAEVLNGS SSSTKTVDWL LQELLKDKLD AWLSSRFQMS  600
KKEQGIIHMI ADLGFEWALY PILDHGVSVD FRDIKGWSAL HWAARFGSEK MVAALIASGA  660
SAGAVTDPTQ QDPNGKTAAS IAASYGHKGI AGYLSEVALT NHLSSLTLEE TEISKDSAQV  720
QAEITVNSIS EPGPSGSEDQ LSLEKTLAAV RNAAQAATRI QAAFRAHSFR KRKQREAAMA  780
ACLQEYGIYC EDIEGISAMS KRTFGKVKNY HSAALSIQKK YRGYKGRKEF LELRQKVVKI  840
QALVRGYQTR KHYRVICWAV GILDKVVLRW RRKGVGLRGF RPDVETTEDS EDEDILKVFR  900
KQKVDGAVNE AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLLG DDDDGLFDIA  960
DMEFDSLFTL P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g027100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY510026	0.0	AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470634.1	0.0	PREDICTED: calmodulin-binding transcription activator 4 isoform X2
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	R0GG07	0.0	R0GG07_9BRAS; Uncharacterized protein
STRING	XP_010470633.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]