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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g026910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28491.4 Da PI: 6.9217 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.5 | 3.1e-22 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ + +r +++ kR+++++KKA ELSvLC++ev+vi ++ +g l++y+ Csa16g026910.1 10 SSSHQVQRATSLLKRQATVFKKARELSVLCAIEVCVICYGADGALKTYP 58 788999******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.11 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-6 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-13 | 13 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-13 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.06E-15 | 17 | 58 | No hit | No description |
PRINTS | PR00404 | 5.9E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKTTKPASSS SSHQVQRATS LLKRQATVFK KARELSVLCA IEVCVICYGA DGALKTYPEE 60 MELLHFHLTT LPLPASSIVD DSYFWRIEDT DLEASVDLDG SLANSNKKKL VRPRCVSKFP 120 VWDPRFDNYS GEQLTGLVQS LERNLTRLQD RFRDLVEVQK QRNMNLGPSS STRNTINQYL 180 LPQQQQQPNQ FSMFLLNHEN GNVSQIPLGL MNQGQSVPMI PPELLMNPDV GNYNSGSLGA 240 FGPPLYDLSQ PLFS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g026910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010474196.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL103 | ||||
Swissprot | Q9LSB2 | 8e-58 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | R0I855 | 8e-58 | R0I855_9BRAS; Uncharacterized protein | ||||
STRING | XP_010474196.1 | 1e-135 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 7e-56 | AGAMOUS-like 103 |
Publications ? help Back to Top | |||
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