 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa16g026870.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
LBD |
| Protein Properties |
Length: 235aa MW: 25645.3 Da PI: 8.3806 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa16g026870.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 94.3 | 1.3e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++ll++ p++ r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+q+
Csa16g026870.1 4 SCNGCRVLRKGCSDNCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQA 98
6*********************9999777889*************************************************************** PP
DUF260 91 kaelallk 98
++e+++++
Csa16g026870.1 99 AVEAVMRG 106
**998766 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH 60
LRPGIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTS 120
QAHPFNNNKL CDIRHVSSKE ENVKRRSRGA CKGERNVRSQ SHESSLSHES PVSSEGTTTE 180
EPKSWIGLEL TLGLEPLARG SHVVVPMKKR KLERCGTSED EDTCKIELGL VCSE*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229650 | 0.0 | AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22. |
