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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g026870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 25645.3 Da PI: 8.3806 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.3 | 1.3e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++ll++ p++ r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+q+ Csa16g026870.1 4 SCNGCRVLRKGCSDNCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQA 98 6*********************9999777889*************************************************************** PP DUF260 91 kaelallk 98 ++e+++++ Csa16g026870.1 99 AVEAVMRG 106 **998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.691 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-24 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH 60 LRPGIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTS 120 QAHPFNNNKL CDIRHVSSKE ENVKRRSRGA CKGERNVRSQ SHESSLSHES PVSSEGTTTE 180 EPKSWIGLEL TLGLEPLARG SHVVVPMKKR KLERCGTSED EDTCKIELGL VCSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g026870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229650 | 0.0 | AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470605.1 | 1e-173 | PREDICTED: LOB domain-containing protein 40-like | ||||
Swissprot | Q9ZW96 | 1e-148 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | R0I7X5 | 1e-153 | R0I7X5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470605.1 | 1e-173 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15248 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-145 | LOB domain-containing protein 40 |