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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g023880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 387aa MW: 43437.4 Da PI: 4.2624 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W+ ++ + g++R++k+c++rw++yl Csa16g023880.2 38 KGAWTAEEDSLLRQCIEKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 85 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.4e-15 | 91 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +gr +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l Csa16g023880.2 91 KGRLNSDEVDLLIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 136 5777889***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.28 | 33 | 89 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 33 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.44E-28 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 38 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.45E-11 | 40 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 88 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.377 | 90 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-14 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-13 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-10 | 97 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEGSSSGLKK GTWTAKEDSL LKQCIDRSME GSSKGLTKGA WTAEEDSLLR QCIEKYGEGK 60 WHQVPLRAGL NRCRKSCRLR WLNYLKPSIK KGRLNSDEVD LLIRLHKLLG NRWSLIAGRL 120 PGRTANDVKN YWNTHLSKKY EPGCKTKMKK KNIISPPTTT TTVQKVNVFK PRPRSFTVNK 180 DCSHLNGLPE VDITPSSNGL IINNVSDDSI TFDKDDEKDD FLNILINEDD MWLENLLDDS 240 QEADAVVPEA TTNEQGATLA FDVEQLSSII QEADAVVPEA TTNEQGATLA FDVEQLWSLF 300 DGETVQLDYI NNVCDESITF DKDDEKDDFL NILINEDDMW LENLLDDSQE TDAGVPEATT 360 NEQGATLAFD VEQFWSLFDG ETVELD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-21 | 23 | 139 | 12 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH12/MYC1, EGL3, or GL3. Promotes the synthesis of phenylpropanoid-derived compounds such as anthocyanins. {ECO:0000269|PubMed:11148285, ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g023880.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By sucrose, nitrogen deficiency, ethylene, UV light and drought. {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF062915 | 0.0 | AF062915.2 Arabidopsis thaliana putative transcription factor (MYB90) mRNA, MYB90-Col allele, complete cds. | |||
GenBank | AF325124 | 0.0 | AF325124.1 Arabidopsis thaliana production of anthocyanin pigment 2 protein (PAP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511463.1 | 1e-169 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9ZTC3 | 1e-129 | MYB90_ARATH; Transcription factor MYB90 | ||||
TrEMBL | D7KTP5 | 1e-137 | D7KTP5_ARALL; MYB transcription factor | ||||
STRING | XP_010511463.1 | 1e-168 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66390.1 | 1e-131 | myb domain protein 90 |