PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g018640.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 399aa MW: 42487.6 Da PI: 6.6448

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g018640.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.7	2.1e-38	57	220	2	122
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ Csa16g018640.1 57 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvpl 151 789******************************************************************99988888888888666667777778 PP TCP 89 ...................................kaaksaakskksqksaasalnlakesrakarara 122 ++ +++++++++q++ ++ + + sr++ r+ Csa16g018640.1 152 ygalglthhhqhqfdeqggafaaaaahaapllgfhHHLQQHHHHHQNQAPVETIPDGENFSRKRYRSID 220 888888888878888888889888887777777765566666666666666666666666665555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.2E-41	62	226	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	63	117	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDLSDIRNNN DTAAAVTTGL GGGARQLVDA SLTIVPRSTP LEDSTLSTTT TAAVAATTTK 60 RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT 120 GTIPANFSTL SVSLRSSGST LSAPPSKSVP LYGALGLTHH HQHQFDEQGG AFAAAAAHAA 180 PLLGFHHHLQ QHHHHHQNQA PVETIPDGEN FSRKRYRSID LSKEDDDDRK QNESKSLKES 240 ETPDPAAAPM WAVAPTSRSS GGNTFWMLPV PPGNQMESSS NNNNNSAGHR APMWPFVNSA 300 GAGAATHFMA GTGFSFPMDQ YRGSPLQLGS FVAQPQPTQN LGLSMPDSKL GMLAALNAAY 360 SRGGNGNGNG EQAVEHQEKP QQSDHDEESR EENSNSSE*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDLSDIRNNN DTAAAVTTGL GGGARQLVDA SLTIVPRSTP LEDSTLSTTT TAAVAATTTK  60
RSTKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT  120
GTIPANFSTL SVSLRSSGST LSAPPSKSVP LYGALGLTHH HQHQFDEQGG AFAAAAAHAA  180
PLLGFHHHLQ QHHHHHQNQA PVETIPDGEN FSRKRYRSID LSKEDDDDRK QNESKSLKES  240
ETPDPAAAPM WAVAPTSRSS GGNTFWMLPV PPGNQMESSS NNNNNSAGHR APMWPFVNSA  300
GAGAATHFMA GTGFSFPMDQ YRGSPLQLGS FVAQPQPTQN LGLSMPDSKL GMLAALNAAY  360
SRGGNGNGNG EQAVEHQEKP QQSDHDEESR EENSNSSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g018640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010470288.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	0.0	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A178WFL5	0.0	A0A178WFL5_ARATH; TCP8
STRING	XP_010470288.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-163	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]