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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g017920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 149aa MW: 17212.5 Da PI: 6.0169 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.9e-11 | 47 | 96 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++ k+ rr +NRe+A+rsR++Kk++ eeL+e+ L + N++Lk++l + Csa16g017920.1 47 ADEKKRRRTLSNRESAKRSRLKKKKRFEELTEELNRLNQRNQELKNRLAN 96 567999***************************************77754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.8E-12 | 45 | 96 | No hit | No description |
SMART | SM00338 | 3.8E-10 | 46 | 117 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.932 | 48 | 97 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.2E-9 | 49 | 96 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.19E-8 | 50 | 97 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MFSTNLEPVH ICFDDAMITG EELTEILAFL QSDESDNPSG TSEMVQADEK KRRRTLSNRE 60 SAKRSRLKKK KRFEELTEEL NRLNQRNQEL KNRLANVVSC GNDISNENNR LRTESVCLEM 120 RLLDLYRFLV AIQSPVSTRV TYITELQI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 71 | RRRTLSNRESAKRSRLKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g017920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470225.1 | 1e-104 | PREDICTED: bZIP transcription factor 2-like | ||||
Swissprot | Q9LQ65 | 1e-73 | BZIP4_ARATH; Basic leucine zipper 4 | ||||
TrEMBL | R0ID76 | 1e-77 | R0ID76_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470225.1 | 1e-103 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12232 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59530.1 | 7e-65 | basic leucine-zipper 4 |
Publications ? help Back to Top | |||
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