PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g006480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 280aa MW: 32043.8 Da PI: 6.4499 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37 | 1.1e-11 | 95 | 136 | 2 | 43 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r++ Csa16g006480.1 95 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRHD 136 9*************************************9975 PP | |||||||
2 | FAR1 | 61.8 | 2e-19 | 135 | 200 | 24 | 91 |
FAR1 24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p Csa16g006480.1 135 HDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 200 57788999*************999..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.3E-17 | 135 | 200 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MMMGIPVELE VTTTVENHNE MGESSGQAMI EQDDDDDDNH NEMGDNSGQG QAMLEQDEKV 60 NPDSLPLAVA DMADNQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS KLSRSRHDGS 120 PIGRQLVCNK EGYRHDGSPI GRQLVCNKEG YRLPSKRDKV IRQRAETRVG CRAMILIRKE 180 NSGKWVITKF VKEHNHPLMP GRVRRGCIYD QYPNEHDKIQ ELMQQLAAEK KRAATYKRHL 240 EMLFEQIEQH NERLSKRIQH IVDNVRNLEQ RDHQQNHQV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g006480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058089 | 0.0 | AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds. | |||
GenBank | AY143081 | 0.0 | AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469317.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | R0FPX5 | 1e-175 | R0FPX5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010469317.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-170 | FAR1 family protein |