PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g006480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 280aa    MW: 32043.8 Da    PI: 6.4499
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g006480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-1195136243
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43 
                     fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r++
  Csa16g006480.1  95 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRHD 136
                     9*************************************9975 PP
2FAR161.82e-191352002491
            FAR1  24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p
  Csa16g006480.1 135 HDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 200
                     57788999*************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-17135200IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMMGIPVELE VTTTVENHNE MGESSGQAMI EQDDDDDDNH NEMGDNSGQG QAMLEQDEKV  60
NPDSLPLAVA DMADNQGDEP YVGQEFESEA AAHGFYNAYA TKVGFVIRVS KLSRSRHDGS  120
PIGRQLVCNK EGYRHDGSPI GRQLVCNKEG YRLPSKRDKV IRQRAETRVG CRAMILIRKE  180
NSGKWVITKF VKEHNHPLMP GRVRRGCIYD QYPNEHDKIQ ELMQQLAAEK KRAATYKRHL  240
EMLFEQIEQH NERLSKRIQH IVDNVRNLEQ RDHQQNHQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g006480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010469317.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0FPX51e-175R0FPX5_9BRAS; Uncharacterized protein
STRINGXP_010469317.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-170FAR1 family protein