PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g002020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 529aa    MW: 59562.7 Da    PI: 4.5576
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g002020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like742e-23215273155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++F  ave++G +ekA Pk+il++m    +v+gLt+++v+SHLQkYR 
  Csa16g002020.1 215 KPRMKWSAELHQKFEAAVEKIGSIEKAYPKQILKCMqedmNVQGLTRNNVASHLQKYRQ 273
                     79*******************************985333389****************6 PP
2Response_reg62.32.6e-21441481105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd + + + l+++++ +  y +v+  d+geea++ l +++  +Dl++ D  mp+++Gl++l +i +e  +lp+++++   ++e++ +  k G
  Csa16g002020.1  44 VLLVDADSNSLLLMTNLMAQYSY-QVTKYDNGEEAMAFLMKSKheIDLVIWDFHMPDINGLDALNTIGKEM-DLPVVIMSHDHKKETVMASTKNG 136
                     89*********************.***************666667**********************6644.7*******99999********** PP

                     ESEEEESS--HH CS
    Response_reg  94 akdflsKpfdpe 105
                     a dfl++p+++e
  Csa16g002020.1 137 ACDFLVEPVSKE 148
                     ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-2641160IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.1E-2841165No hitNo description
SMARTSM004481.7E-1642153IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.49343158IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.8E-1744148IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.29E-1745153No hitNo description
PROSITE profilePS512949.024212276IPR017930Myb domain
SuperFamilySSF466891.43E-13214276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-22214275IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-19215273IPR006447Myb domain, plants
PfamPF002491.6E-7217272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSVSANILDE NSRNLRKEVL ACDDEIESPI NDDDEEFPTT SIRVLLVDAD SNSLLLMTNL  60
MAQYSYQVTK YDNGEEAMAF LMKSKHEIDL VIWDFHMPDI NGLDALNTIG KEMDLPVVIM  120
SHDHKKETVM ASTKNGACDF LVEPVSKEVV AVVWQHVYRK SISKSGLDKP GESCTVESDS  180
DEYEGLLGQD NLHQSHGEGS KNTCDQKEDV SSAMKPRMKW SAELHQKFEA AVEKIGSIEK  240
AYPKQILKCM QEDMNVQGLT RNNVASHLQK YRQSSNKKTS TPQETQEDHF DWCNTGQDPP  300
DFAASNPPLS STRAPYFMND IQAAAMPRTS YFTTDQAAPP IQCLSNGYNL PMNNKNTYFM  360
ANHVTYIDQF QQPLQQQQYQ YPCLNLPSML TKQESGHVSS AMENSDTLIY SSSFPNFDHD  420
DYFPPAEFNN NNNPDQFPPF GLNNNRDHQF PPAGMNSNHD QFPPAGLNNN NRDQFPPSGL  480
NNNNRDQFPL AGMNNNTRDQ FPPSGLNNTR DQFPLAGFNN NFDQTGRN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g002020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-83AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-83CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473766.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-177ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010473766.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-128response regulator 20