PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g001200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 278aa    MW: 31750.8 Da    PI: 5.8448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g001200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.6e-36261182103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F++k+ye+++d+++++++sws+ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k+++e+         weF ++ F  g+++ll++
  Csa16g001200.1  26 FITKTYEMVNDPNINHIVSWSRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIETER---------WEFMNEGFLMGQRDLLKS 111
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++s+
  Csa16g001200.1 112 IKRRASS 118
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3722115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5322115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.67E-3422115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.1E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.2E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDPPSSSRPR SMPPVPMQEP PGPSPFITKT YEMVNDPNIN HIVSWSRGGI SFVVWDPHSF  60
SATILPLYFK HNNFSSFVRQ LNTYGFRKIE TERWEFMNEG FLMGQRDLLK SIKRRASSSA  120
PPSLHHSQSE CHDPSVEAPQ LREESHVLMM EISRLRQEEQ RARGCIQAME QRINGAEKKQ  180
RHMMSFLRRA AQNPSLLQQL LEKMTGIEEA AMINQANLVK TEAVEHVSEL EALALEMQGY  240
GRQRIDGVER ELDDGFWEEL LLSNDNSGEE EANVKQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-241711811123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g001200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4467840.0DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds.
GenBankDQ6531660.0DQ653166.1 Arabidopsis thaliana clone 0000012913_0000009313 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468856.10.0PREDICTED: heat stress transcription factor A-7b-like
SwissprotQ9M1V51e-164HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLR0HQ531e-162R0HQ53_9BRAS; Uncharacterized protein
STRINGXP_010468856.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-144HSF family protein