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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16470s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 66aa MW: 7434.6 Da PI: 9.6855 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.6 | 5.9e-22 | 7 | 56 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s +++++ R+++i+ KA+ LS+LC+++v+vi+++++g l+++++ Csa16470s010.1 7 SSSSYSLASTSLRSRLETIFRKAKQLSILCQVDVCVIYYGPDGDLKTFPN 56 799*********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0081 | 5 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-12 | 16 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.853 | 16 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-11 | 17 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.13E-11 | 21 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence Send to blast |
MRLPSSSSSS YSLASTSLRS RLETIFRKAK QLSILCQVDV CVIYYGPDGD LKTFPNDKEK 60 VRNMAM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16470s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480551.1 | 3e-41 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 1e-19 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | Q9SUT6 | 4e-19 | Q9SUT6_ARATH; AGAMOUS-like 52 | ||||
STRING | XP_010480551.1 | 1e-40 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11250.1 | 3e-20 | AGAMOUS-like 52 |
Publications ? help Back to Top | |||
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