PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g082700.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 403aa MW: 44897.8 Da PI: 4.5657

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g082700.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	235	289	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fv+av+qLGG ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Csa15g082700.1 235 KRRMRWTPELHEVFVDAVNQLGGGEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 289 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.671	232	292	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-32	233	290	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-18	234	289	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-25	235	290	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-10	237	288	IPR001005	SANT/Myb domain
Pfam	PF14379	5.5E-21	321	365	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MERRPLRPPV PSDISDTCSL IPSFQNPSVK EADMSFYPQH NQLMATPYHL LSANDGAVDH 60 IYSSSDLSAN DGAVDHIYST SVLSDNDGVV DHIYSSDFHN SFVPESSVWI PSPLPDTFDF 120 PSASPIQSSQ MEDGVIVASD DIHEQCDWPV WDDHLITDGG DALMSTVLEE LLHDTNFNSA 180 SEVQQPSTPS QIQQPQVGLQ QPSPCLDLRP LVRTVSSNSN NNNSSSNSNN NAAAKRRMRW 240 TPELHEVFVD AVNQLGGGEK ATPKGVLKLM NVEGLTIYHV KSHLQKYRTA KYIPEPSEGS 300 PETKLTPLEQ VTYVDTKRGI DVTEALRLQM EVQKQLHEQL EIQRKMQIRI EEQGKALLMM 360 FEKQNIGFGK LEQEDKASAE TPENCSEESS DSPRAKRRRN EE*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MERRPLRPPV PSDISDTCSL IPSFQNPSVK EADMSFYPQH NQLMATPYHL LSANDGAVDH  60
IYSSSDLSAN DGAVDHIYST SVLSDNDGVV DHIYSSDFHN SFVPESSVWI PSPLPDTFDF  120
PSASPIQSSQ MEDGVIVASD DIHEQCDWPV WDDHLITDGG DALMSTVLEE LLHDTNFNSA  180
SEVQQPSTPS QIQQPQVGLQ QPSPCLDLRP LVRTVSSNSN NNNSSSNSNN NAAAKRRMRW  240
TPELHEVFVD AVNQLGGGEK ATPKGVLKLM NVEGLTIYHV KSHLQKYRTA KYIPEPSEGS  300
PETKLTPLEQ VTYVDTKRGI DVTEALRLQM EVQKQLHEQL EIQRKMQIRI EEQGKALLMM  360
FEKQNIGFGK LEQEDKASAE TPENCSEESS DSPRAKRRRN EE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-30	234	292	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00111	ampDAP	Transfer from AT2G20400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g082700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010467831.1	0.0	PREDICTED: myb family transcription factor PHL4-like isoform X2
Swissprot	Q8GXC2	1e-145	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	D7L3M9	1e-150	D7L3M9_ARALL; Uncharacterized protein
STRING	XP_010467830.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-133	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]