PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g082580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 316aa    MW: 36694.4 Da    PI: 5.2108
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g082580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind49.11.5e-15131062102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F + lye+++d++ +++isws++++sfv+ ++ee+ ++ + + F  ++++ F+ +L+  gFk++k++++        weF +k+F +g+ el+ +
  Csa15g082580.1  13 FYEGLYELVDDPSSDSTISWSKSNKSFVIRNQEELIRRKMLSRFFCRKLTEFISKLKFSGFKQMKRSSGL-------WEFGDKNFVRGRPELMVE 100
                     7889****************************999887777777788999*****************987.......****************99 PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ++++ s
  Csa15g082580.1 101 MHKRVS 106
                     999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.4E-19999IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-219104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.1E-1811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-1513103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAYDGYPKSG LRFYEGLYEL VDDPSSDSTI SWSKSNKSFV IRNQEELIRR KMLSRFFCRK  60
LTEFISKLKF SGFKQMKRSS GLWEFGDKNF VRGRPELMVE MHKRVSMARI TERSNQMKAM  120
SFDGLPLGED RLGDDDDTVV PDSQESEVRY LNLKETVSTE LKCFREHLIG AKRFIQDTTI  180
TKDQIRASIR CFKTLIDNFN NVWEQFRSGR DQELISLRHR MVLPSSDDSE ELSCDQLRLN  240
AHTLLKFFSE KTFNPFVEAF APFVTVRKES ASTMDALTEI QHVVEDSDTL IYRVTHDGFD  300
GRDISAEEEA DDIEW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g082580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467816.10.0PREDICTED: uncharacterized protein LOC104747816
STRINGXP_010467816.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.11e-27HSF family protein