 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa15g079210.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 216aa MW: 24928.8 Da PI: 4.9271 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa15g079210.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.2 | 7.9e-20 | 57 | 110 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq++ Le Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
Csa15g079210.1 57 KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110
45899***********************************************95 PP
|
| 2 | HD-ZIP_I/II | 123.1 | 1.4e-39 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kr+ls+eqv++LE sFe ++kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k++E +y++Lk+ay++++ +++rL++ev +L+e+l e
Csa15g079210.1 56 RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYENVVVDRCRLDSEVLQLKEQLYE 147
8***************************************************************************************9976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MNNQNVDDHN LLLISQLYPD VYTSLVPQQG EAKPARRRKR KSKSAAVGEG GNGWFRKRKL 60
SDEQVRMLEI SFEDDHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KRVEDEYTKL 120
KNAYENVVVD RCRLDSEVLQ LKEQLYEAER EIQSLAQRVE GTLISNSPIS SSVTVEANQA 180
TPFFGDYDIC VDGDGDNLLY SPDYFDGLEW MSQFM*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 38 | 58 | KRKSKSAAVGEGGNGWFRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT031362 | 1e-177 | BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds. |
