PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g071570.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 673aa    MW: 77683.5 Da    PI: 9.471
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g071570.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-151613699
                    EEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 36 ltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +++++++grsWev +  +k+++  ++ ++GW++Fvk+n L   +f++F+++g+++f  +v++f++
  Csa15g071570.2  1 MKIRTQWGRSWEVAI--SKNPRFyFMEKSGWEKFVKDNALGHSEFLTFTHKGNMSF--TVSIFKQ 61
                    57899**********..******555569***********************9***..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.91E-10160No hitNo description
PfamPF023621.1E-12161IPR003340B3 DNA binding domain
SMARTSM010190.011162IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-12268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-14263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-6182252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-9183255IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-6188261No hitNo description
SMARTSM010191.3E-4190283IPR003340B3 DNA binding domain
TIGRFAMsTIGR016402.0E-36331545IPR017451F-box associated interaction domain
PfamPF082682.1E-22425563IPR013187F-box associated domain, type 3
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MKIRTQWGRS WEVAISKNPR FYFMEKSGWE KFVKDNALGH SEFLTFTHKG NMSFTVSIFK  60
QNGKEMLQPS QSRASLASSS KICFSEYETV NHIKTSNNSF TFDDETGRIK TEQRRGSVYN  120
DVKKDKVVSP ELSNRGATRE AESNGGEKYK RKLSFRKKKP EETQNSKRSE KVVRARRDSA  180
ASSSSSVPEF TILFKKAYLI FLRIPVSFAK DHMSEEKTMF KIHHPDGKKS WNVVYLVRFR  240
AFSGGWRSLV KELVLQPIIK FSISAPPAIV ENGNENAKAC GVWSFFSSPQ LENPYEKSSS  300
TALVAAAELH VRFSPDSLLI NHDYDLRYCS CGYVSGLFYI YGNRYQARPL ICNPVTGRYV  360
ILPDRYTYRK AYSFFGFDPI EKQYKALSMA YYCAPGRNKI LTLEDGDLTW RRIKCPIRHD  420
IKSDGVCING VLYYLGDTSD CYNDAHVVTS DYIIVCFDVR SEKFFFIDVE RFCRLINYKG  480
KLAVIYWEDD EDIYKKCYFG KDLDEYLEEN LEADATNELH VWVLEDVEKQ EWSKYEYTWT  540
DDRFFRRQVS IAGATAIARF HCVSKLWASM LASSYFKELF RTKSLAKPRL LFAIVKKDKW  600
RFFSLPQLHN PYEKSSSTLV AAAEFHVKFP RKILHNSNRL YFAHGYASGL IYFKGASADD  660
RLVICNPNTG GS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g071570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444278.10.0PREDICTED: F-box protein At2g15640-like
SwissprotQ9ZQF01e-144FB104_ARATH; F-box protein At2g15640
TrEMBLR0HSH11e-157R0HSH1_9BRAS; Uncharacterized protein
STRINGXP_010444278.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.12e-70B3 family protein