PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 81aa MW: 8817.02 Da PI: 10.8468

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g064600.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.7	1.7e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev viifsstgkly+y+s Csa15g064600.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYAS 59 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.0E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.665	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.56E-37	2	61	No hit	No description
SuperFamily	SSF55455	1.96E-29	2	66	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGVIIFSS TGKLYDYASN 60 SRLANNETHI SSSSIHSTSQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-21	1	59	1	59	MEF2C
5f28_B	9e-21	1	59	1	59	MEF2C
5f28_C	9e-21	1	59	1	59	MEF2C
5f28_D	9e-21	1	59	1	59	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269\|PubMed:15667327, ECO:0000269\|PubMed:17148611, ECO:0000269\|PubMed:9430595}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g064600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate in root cell culture, (PubMed:9430595, PubMed:17148611). In roots, seems induced by nitrogen (N) deprivation (e.g. nitrate free medium) but rapidly repressed by N re-supply (e.g. nitrate, glutamine and ammonium) (PubMed:16021502). Slight repression in shoots during nitrogen (N) deprivation. {ECO:0000269\|PubMed:16021502, ECO:0000269\|PubMed:17148611, ECO:0000269\|PubMed:9430595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007210	1e-88	AC007210.6 Arabidopsis thaliana chromosome 2 clone F15N24 map PR1, complete sequence.
GenBank	CP002685	1e-88	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_179033.1	8e-36	AGAMOUS-like 44
Refseq	XP_002883829.2	7e-36	MADS-box transcription factor ANR1
Refseq	XP_010488877.1	6e-36	PREDICTED: MADS-box transcription factor ANR1-like
Refseq	XP_010517438.1	6e-36	PREDICTED: MADS-box transcription factor ANR1-like
Refseq	XP_019092332.1	6e-36	PREDICTED: MADS-box transcription factor ANR1
Swissprot	Q9SI38	7e-37	ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBL	V4NWA2	4e-36	V4NWA2_EUTSA; Uncharacterized protein
STRING	XP_006409663.1	6e-37	(Eutrema salsugineum)
STRING	XP_010467223.1	2e-35	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	5e-39	AGAMOUS-like 44

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Yan Y,Wang H,Hamera S,Chen X,Fang R miR444a has multiple functions in the rice nitrate-signaling pathway. Plant J., 2014. 78(1): p. 44-55 [PMID:24460537] Lei L, et al. Nitrogen use efficiency is regulated by interacting proteins relevant to development in wheat. Plant Biotechnol. J., 2018. 16(6): p. 1214-1226 [PMID:29193541] Sun CH, et al. Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis. Plant Sci., 2018. 266: p. 27-36 [PMID:29241564]