PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g044640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 961aa    MW: 107753 Da    PI: 7.9663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g044640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-16631717196
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffk l     ++s+ l++p  f+ ++ +g +e++kt  l++  s  +W+vk+  ++++    lt+GWkeF+ a++L+ gD+vvFk +++++f  +
  Csa15g044640.1 631 FFKPL--LPGFQSH-LTIPVAFFLKNiEGRNEQKKTAELRSdASKITWKVKI--DGQR----LTNGWKEFALAHDLRIGDIVVFKQERDMSF--H 714
                     67777..6677887.*******9999977788999****9968889******..9888....***********************8777888..7 PP

                     EEE CS
              B3  94 vkv 96 
                     v++
  Csa15g044640.1 715 VTM 717
                     765 PP
2B357.42.6e-18858951196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++v++++++ +++ l+lp +f++ +g++k++  ++++ d++g +W+ +++++  ++r+ l++ WkeF++an++k g++++++l++  +++ v+k
  Csa15g044640.1 858 FVTVTLTPYNIRESKLTLPIPFTKVNGLQKAK--KMSFLDKHGMKWSTNMCFEVERKRMKLAGSWKEFCNANDVKIGESIILELVWGADRSSVLK 950
                     789999***********************765..8**************************************************9866655655 PP

                     E CS
              B3  96 v 96 
                     +
  Csa15g044640.1 951 F 951
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813835.23E-599140IPR001810F-box domain
Gene3DG3DSA:1.20.1280.507.7E-4101139No hitNo description
PfamPF034781.4E-7397439IPR005174Domain unknown function DUF295
Gene3DG3DSA:2.40.330.102.2E-22628734IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.829628721IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-17628727IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-14630718No hitNo description
SMARTSM010192.4E-22631721IPR003340B3 DNA binding domain
PfamPF023628.5E-11638715IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-5748800IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2756854IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-19850952IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-18854943IPR015300DNA-binding pseudobarrel domain
CDDcd100177.15E-15857952No hitNo description
PROSITE profilePS5086313.324858954IPR003340B3 DNA binding domain
PfamPF023621.1E-17858952IPR003340B3 DNA binding domain
SMARTSM010191.7E-21858955IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MPVCVYGNQH SKEMASDKDK VVSPSVEIEN IVGFRNSLPL YGSLRGCSQL KLKSANMEEP  60
ETDKKTSSMI LDCSLLPELV SKLQLSPSPS AKMATKDLTL SKTDWSFLPE ELLLTISTLL  120
NNCFHVVHAR SVCTSWRSAF PFPSSLLRAS YSLPKLAEFT LESKDSCTLE KVPLFLFRVV  180
KTRAAVSPTA YVMGGIGRDE DDHIELLPYP LQCSVKVNIP GSDRNLVKML DCQILSLGHQ  240
YRMIGWDPEE SSTNYRGVAF LPLNKERGGG GGGGEYVVIL NYSRVLLVLR SSEMRWLWLQ  300
NVSDAPCRDL VTFRGRFYAA FFNGDVVIID PYSLEVFIPL MPSQPMNSSN FLVPSGDDEL  360
FLVENTIPTS SSDEVDINGF ICRVSKLDEE AGKWVVVSDL GDRVLFIGHF GNVCCSAKEL  420
PDGYGVSGNS ILFTNEGGCV MYAYKYGLHT GRAEDDLCCW RLSSENRVAI INRSPALSLW  480
SGTFLPLNID GGREFGNFSS EVARQMSFGS WIKITSNLIL RFEIRLDQSY LSFNVFSREY  540
PHNNLVNTTQ PCLMKSQSCI SPAEYLQMFQ ATFMATITKD CTMQGNKTGH VCLILMPWRL  600
GAKFRPHRDE ISCSVKSERD LGALMMANQH FFKPLLPGFQ SHLTIPVAFF LKNIEGRNEQ  660
KKTAELRSDA SKITWKVKID GQRLTNGWKE FALAHDLRIG DIVVFKQERD MSFHVTMLGP  720
SCCQIQYVSS LDNQNNLGEI QRKKKKAESS LDQSCFVANV TVSNLRYDSL NLPMSFVRAN  780
GLNTRCGERI LINEKGRSWT LMDLVLVISS HSNFQKGGTL GLRLSPGEIE EEDCLSEGNV  840
VKNRLIWKAS SSESQNRFVT VTLTPYNIRE SKLTLPIPFT KVNGLQKAKK MSFLDKHGMK  900
WSTNMCFEVE RKRMKLAGSW KEFCNANDVK IGESIILELV WGADRSSVLK FSSKVNQETN  960
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g044640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072668e-77AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBankCP0026858e-77CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.18e-89B3 family protein