PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g040580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 409aa    MW: 47018.1 Da    PI: 4.802
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g040580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35641562103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  Csa15g040580.1  64 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLKN 149
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  Csa15g040580.1 150 IRRRKTS 156
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.58E-3659153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6060153IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.4E-3960153IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3164153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196487IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340103127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-19115127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDPSFRFIKE EFPTGFSDSP SPPSSSSSSY LYSSSMAEAA LYDPTTLSYP QPIEGLHESG  60
PPPFLTKTYD LVEDSRTNHV VSWSKSNNSF IVWDPQAFSV TLLPRFFKHN NFSSFVRQLN  120
TYGFRKVNPD RWEFANEGFL RGQKHLLKNI RRRKTSNNSN QLQQPQGSEQ QSLDNCCIEV  180
GRYGLDGEMD SLKRDKQVLM MELVRLRQQQ QSTKMYLTTI EEKLKKTESK QQQMMSFLAR  240
AMKNPDFIQQ LMEQKEKRKE IEEAISKKRQ RPIDQGKRNV VNVGDYDDES GYGNNAAAST  300
SAFVDMNQET YGNTSQYEMS ELDRLAMHIQ GLGDHSTREE FMNVGKGNED EEEDQQRGCQ  360
KEKMEIYGEG FWEDLLNEGQ NFDFEGDQEN VDVLIEQLGY LGSNSHIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-255915612123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g040580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466576.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLR0G5K10.0R0G5K1_9BRAS; Uncharacterized protein
STRINGXP_010466576.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B