PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g040480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CPP | ||||||||
Protein Properties | Length: 674aa MW: 74314.2 Da PI: 5.9357 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.6 | 3.8e-16 | 377 | 415 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk Csa15g040480.1 377 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 415 689**********************************96 PP | |||||||
2 | TCR | 50.5 | 4.2e-16 | 462 | 500 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Csa15g040480.1 462 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNV 500 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.3E-19 | 376 | 417 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.507 | 377 | 502 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.4E-12 | 379 | 414 | IPR005172 | CRC domain |
SMART | SM01114 | 3.7E-17 | 462 | 503 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.5E-11 | 464 | 499 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
DSPVFNYISN LSPIESVKSI STAQTFSSLS FTSPPPVFTS PHVNSYRESR FFRCHNSIDR 60 TKPLEDLNGS VFKEEAVVPV IEDLNKEAPF EDEEEETSVE TSSELPQILK SDSQTPDRSD 120 SPCTDDVTLE APSDNPRGEG GSSSEDVKMG LEKMLDVREA NDTPNCGRLI SDATELLVFR 180 SPNDSEAFRC LVDKISSSER RFCAGVKSTK RPDINKDVPA NGSSNENEPS AVLPNESVFS 240 LNRGGMRRRC LDFEMPGKRK KEIADDQQSV CDNKEAGESS SSCVVPGIGL HLNSVALSAR 300 DSNINVVHDY SISGEIQKSF SGSTTPIQSQ DTVQETSDQA ENEPVEEVPR ALVFPELNSG 360 SLKKKKRVSE QAGEGESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCID CFNKPIHEET 420 VLATRKQIES RNPLAFAPKV IRSADSIMEA GDDASKTPAS ARHKRGCNCK KSNCLKKYCE 480 CYQGGVGCSI NCRCEGCKNV YGRKEGSLLV IMESKQEEDQ ETYEKRRAKI QHKIEVSREV 540 EQNPSSDQPS TPLPPYRHLV VHQPFLSKNR LPPTQFFIGM GSSSFRKQDS DLTQSHNEKK 600 PIDPVTEDKT EIMPEILLNS PIANIKAISP NSKRVSPPQL GSSESGSNLR RRGNGRKLIL 660 RSIPAFPSLN PNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-16 | 381 | 500 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 2e-16 | 381 | 500 | 14 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 260 | RRRCLDFEMPGKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00370 | DAP | Transfer from AT3G22780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g040480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF204059 | 0.0 | AF204059.1 Arabidopsis thaliana CXC domain protein TSO1 (TSO1) mRNA, complete cds. | |||
GenBank | AF206324 | 0.0 | AF206324.1 Arabidopsis thaliana putative DNA binding protein (tso1) mRNA, tso1-3 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488309.1 | 0.0 | PREDICTED: CRC domain-containing protein TSO1 isoform X2 | ||||
Refseq | XP_019096881.1 | 0.0 | PREDICTED: CRC domain-containing protein TSO1 isoform X1 | ||||
Swissprot | Q9LUI3 | 0.0 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A178VBV1 | 0.0 | A0A178VBV1_ARATH; TSO1 | ||||
STRING | XP_010468392.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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