PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g034750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 495aa MW: 55236.2 Da PI: 5.5401 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.1 | 9.4e-26 | 98 | 200 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY+eY++ +GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ +r+ +t+Cka+++vk++ dgkw++++++ Csa15g034750.1 98 SFYQEYSRAIGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSfnrprarqskqdPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVR 192 5*******************************************99999999877654444444499999************************* PP FAR1 84 eHnHelap 91 eHnHel p Csa15g034750.1 193 EHNHELLP 200 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-23 | 98 | 200 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MDIDLRLHSG DLCKGDDDED RGLDNVLQNE HKLHDAAAAD EEEDIDIGKI EDVAVEVHTD 60 DGLGMSLPAG DLVDYNEGMM NLEPLNGMEF ESHGEAYSFY QEYSRAIGFN TAIQNSRRSK 120 TTREFIDAKF ACSRYGTKRE YDKSFNRPRA RQSKQDPENM AGRRTCAKTD CKASMHVKRR 180 PDGKWVIHSF VREHNHELLP AQAVSEQTRK IYAAMAKQFA EYKSVASLKS DSKNRCEEEA 240 KADSETWNKQ PALKSPSPFE KSVSEVYTPA VFKKFQIEVL GAIACSPREE GRDATCSTFR 300 LNEEASFSQE SYNIAFGAIE GALGNCAGIN TSGRSLPDVV TSPTQGLISV EEDNQSRNAG 360 KTSKKKNPTK KRKVNSEPEV MPVAPPESLQ QMDKLSPRTV SIESYYGTQQ SVQGMVQLNL 420 MAPTRDNFYG NQQTMQGLRQ LNSLAPSYDS YYGAQQGIHG PGVDFFRPPS FSYDIRDDPN 480 VRTTQLHEDA SRHS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g034750.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001306 | 0.0 | AP001306.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466484.1 | 1e-154 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 1e-139 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A2P5Q0G2 | 1e-179 | A0A2P5Q0G2_GOSBA; Uncharacterized protein | ||||
STRING | XP_010466484.1 | 1e-153 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 1e-132 | far-red elongated hypocotyls 3 |