PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g032400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 420aa    MW: 48374 Da    PI: 5.3817
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g032400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08832126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  f  tG C++ ++C+FaHg
  Csa15g032400.1  8 YKTKLCILFKNTGNCSR-PNCSFAHG 32
                    9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-12539IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6737IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183734IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6832IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MMSGSSMYKT KLCILFKNTG NCSRPNCSFA HGTAELRRPR ESSFTGRHHN MDSDLRDRLG  60
RQFSPERRPS LDRSGRRLQR FGGHENARPF ENRRNKDYRG NHRFDERRDY AGGLKVGNRI  120
EDRAQDGRNK FQGYNNVEDG RNKFQGYNNV LEEQLKDVEM DVKMLTDDKL RLEASVERKA  180
HEVDILISRI EELETQLDRE KEECRRSEAR LQKLVNQLST YLAESEGINR DVNVDIVSDE  240
ENNGRNLRTA CDPQNELQNT SSMPRKKRYV DQYTTKENVE DGFKGRGEEE KIEKEKEKKR  300
PSRWYLGSSK SYSEEESGAW NDEDTINKSS SKEDNWKRRR FSIGTSSTDK VISSTSMAAR  360
TFDDVAEFEE ENPEAAKSSP LISLPPPPPF GDTHVQGDED DENVDVMEQG KANDLDDSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g032400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0598990.0AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds.
GenBankAY1287910.0AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466443.10.0PREDICTED: zinc finger CCCH domain-containing protein 40-like isoform X1
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLR0HR330.0R0HR33_9BRAS; Uncharacterized protein
STRINGXP_010466443.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein