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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Csa15g029510.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
ERF |
| Protein Properties |
Length: 234aa MW: 25310.8 Da PI: 7.2044 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa15g029510.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 49.4 | 1.1e-15 | 17 | 59 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+gr++AeIrdp + + r++lg+f++aeeAa+a++aa+++l+g
Csa15g029510.1 17 AXWGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDAAARNLRG 59
57**********743...5*************************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MAEAAASSSV AKPLHHAXWG RFAAEIRDPL KKSRVWLGTF DSAEEAARAY DAAARNLRGP 60
KAKTNFPIDC SPSSPLQPLN FHQNQNQNRN QNLCSVAANQ NQIDPFMDHR LYGGGNFQDQ 120
QMISRPASSS MSSTVKSCSG PRPMAEAAAS SSVAKPLHHA IKKRYPRTPP VAPEDCHSDC 180
DSSSSVIDDG DDIASSSSRR KPPFQFDLNF PPLDGVDLFA GATDDLHCTD LRL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB024036 | 1e-137 | AB024036.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12. |
| GenBank | AB032201 | 1e-137 | AB032201.1 Arabidopsis thaliana mRNA for ERF transcription factor 7, complete cds. |
| GenBank | AK228460 | 1e-137 | AK228460.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding factor, complete cds, clone: RAFL15-05-J12. |
| GenBank | AY037254 | 1e-137 | AY037254.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. |
| GenBank | AY085023 | 1e-137 | AY085023.1 Arabidopsis thaliana clone 124720 mRNA, complete sequence. |
| GenBank | AY094001 | 1e-137 | AY094001.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. |
| GenBank | CP002686 | 1e-137 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Galuschka C,Schindler M,Bülow L,Hehl R
AthaMap web tools for the analysis and identification of co-regulated genes.
Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
[PMID:17148485] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Giuntoli B,Perata P
Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
Plant Physiol., 2018. 176(2): p. 1143-1155
[PMID:29269576]
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