PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 408aa MW: 46442.6 Da PI: 6.2574

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g027790.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.7	4.9e-21	8	57	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s ++++s+R+ +i+ KAe LSvLC+++v+vi+++++g l+++++ Csa15g027790.1 8 SSSSYSLTSTSLSNRLLTIFRKAEQLSVLCEIDVCVIYYGPQGDLKTFPN 57 799*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0046	6	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-10	16	55	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-11	17	87	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.442	17	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MRPSSSSSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCEID VCVIYYGPQG DLKTFPNEKE 60 KVRNMAMRYS RLDESLRSKK RTHLSEFLEE NPNKRMKTSP SPEKNVDVLK YPISDHYSPD 120 QISQLIQSLE LNLSTSQQRL RFLLESHEKH KLLDHHHHQS LASSSSQNHQ TQSLNPSQKF 180 SLFMYNHGDN NLSQIPVSAS NLSQDFSALL EESHLKNQLM KQELSDCDQN ICMSDITNNS 240 FQHPCVLETE HTQGSFQHPC VSNTEAVQES VNNYGLNQLM QNQFYACDQN MSSIMGNSGL 300 MQHEFSTSLR LRNRTYSGVQ ESFGMNQLMQ KEFYGYDQNM SSMGIINSSS FQHPCVSNTE 360 AVQESVNNYG LNQLMQNQFY ACDQNMSSIM GNSGLMQHEV YGYDQNL*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MRPSSSSSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCEID VCVIYYGPQG DLKTFPNEKE  60
KVRNMAMRYS RLDESLRSKK RTHLSEFLEE NPNKRMKTSP SPEKNVDVLK YPISDHYSPD  120
QISQLIQSLE LNLSTSQQRL RFLLESHEKH KLLDHHHHQS LASSSSQNHQ TQSLNPSQKF  180
SLFMYNHGDN NLSQIPVSAS NLSQDFSALL EESHLKNQLM KQELSDCDQN ICMSDITNNS  240
FQHPCVLETE HTQGSFQHPC VSNTEAVQES VNNYGLNQLM QNQFYACDQN MSSIMGNSGL  300
MQHEFSTSLR LRNRTYSGVQ ESFGMNQLMQ KEFYGYDQNM SSMGIINSSS FQHPCVSNTE  360
AVQESVNNYG LNQLMQNQFY ACDQNMSSIM GNSGLMQHEV YGYDQNL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	KKRTH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g027790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019092249.1	0.0	PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-109	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJI6	1e-118	D7MJI6_ARALL; Predicted protein
STRING	XP_010481185.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-99	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]