PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g027110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 392aa    MW: 43679.9 Da    PI: 7.3754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g027110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.9e-09107131126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C  f++ GtC+ G+ C+FaHg
  Csa15g027110.1 107 YKTRMCAKFRA-GTCRNGELCNFAHG 131
                     9**********.*************8 PP
2zf-CCCH19.61.6e-061962101125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F+H
  Csa15g027110.1 196 F-GeECPYGDRCNFIH 210
                     5.449*********** PP
3zf-CCCH43.93.9e-14275301127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f  tG+C++Gd+C+FaHg+
  Csa15g027110.1 275 WKTRLCMKFEITGQCPFGDKCHFAHGQ 301
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-15104139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-8105137IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793106133IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5107131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577185213IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033185212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-8187213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-10270305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-15272304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507274302IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7274301IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-11275301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQNQMMDSTV NPVNSEQGDL HSLSESQSSQ QLQQQPSLKR  60
PRLADDNVFN LPPSSFPPPT PTSSNPWMVP SLNPPPPVNK GTANIFYKTR MCAKFRAGTC  120
RNGELCNFAH GIEDLRQPPS NWQEIVGPPA QDRDRERERE RERERERPVL APVGNNNWED  180
DQKIILRMKL CRKFCFGEEC PYGDRCNFIH EELSKFREDS GKLRETSVIS VGTTAADQPS  240
VDNGTASNHI EVNRQGSIPV PPPMSNGGVV KTVYWKTRLC MKFEITGQCP FGDKCHFAHG  300
QAELHNSVGR VEGEAVNAVA SVSKQTVAPA NESFAMKPTA QVIADSSGLN EEGRRKKCLL  360
KWSDSKKINR IYGDWIDDLP VGQKSTKPVE S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156166RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g027110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466077.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_019092118.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLR0HYU20.0R0HYU2_9BRAS; Uncharacterized protein
STRINGXP_010466077.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein