PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g027020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 75aa MW: 8890.34 Da PI: 10.9546 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.1 | 1.4e-11 | 1 | 49 | 10 | 58 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kNRe+A r R+RK+a++ eLe ++++L++ N++L+ + e+ ++ ++ Csa15g027020.1 1 MIKNRESAARLRARKQAYTLELEAEIEKLKKTNQELQRKQAEMMEMQKN 49 68**********************************7666655555443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00170 | 4.5E-9 | 1 | 50 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.795 | 1 | 45 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.7E-9 | 1 | 45 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-11 | 1 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MIKNRESAAR LRARKQAYTL ELEAEIEKLK KTNQELQRKQ AEMMEMQKNE LKESSKRPWG 60 SKRQCLRRTL TGPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g027020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017161 | 8e-99 | AB017161.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 2 (AREB2), complete cds. | |||
GenBank | AF093547 | 8e-99 | AF093547.1 Arabidopsis thaliana clone 19 abscisic acid responsive elements-binding factor (ABRE) mRNA, partial cds. | |||
GenBank | AY050897 | 8e-99 | AY050897.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds. | |||
GenBank | AY091298 | 8e-99 | AY091298.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019092820.1 | 2e-44 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2 | ||||
Swissprot | Q9M7Q2 | 5e-42 | AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | A0A0D3CII2 | 2e-40 | A0A0D3CII2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397ZLC0 | 3e-40 | A0A397ZLC0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E0W2 | 1e-40 | M4E0W2_BRARP; Uncharacterized protein | ||||
STRING | Bra022409.1-P | 2e-41 | (Brassica rapa) | ||||
STRING | Bo5g115300.1 | 4e-41 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19290.1 | 3e-34 | ABRE binding factor 4 |
Publications ? help Back to Top | |||
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