PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g027010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 315aa MW: 33556.5 Da PI: 9.8565

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g027010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.3	3.3e-13	236	289	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ ++ Csa15g027010.1 236 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQRKQAEMMEMQKN 289 79***************************************8666665555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-11	232	296	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	234	285	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.56E-10	236	285	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-13	236	291	No hit	No description
CDD	cd14707	5.22E-23	236	288	No hit	No description
Pfam	PF00170	7.3E-11	236	289	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	239	254	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MGTHINFNNI GGGGTPGGEG SNQMKPTGNV MPLARQSSLY SLTFDELQST LGGPGKDFGS 60 MNIDDLLKSV WAAEEAQAIA MTSSSAATAV AQPGAGPAGI PGGNLQRQGS LTLPRTLSQM 120 TVDEVLKSLG TKDSNGNMGS SSGGGGDSNA PPGRQQTLGE MTLEEFLFRA GVVREDNCVQ 180 PMGQANGNNN DGFYANNTAA GGLGTSSAEN NSLSPVPYVL NRGRRSNTGM DKVVERRQRR 240 MIKNRESAAR SRARKQAYTL ELEAEIEKLK KTNQELQRKQ AEMMEMQKNE LKESTKRPWG 300 AKGQCLRRTL TGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g027010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017161	0.0	AB017161.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 2 (AREB2), complete cds.
GenBank	AB025624	0.0	AB025624.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLD14.
GenBank	AF093547	0.0	AF093547.1 Arabidopsis thaliana clone 19 abscisic acid responsive elements-binding factor (ABRE) mRNA, partial cds.
GenBank	AY050897	0.0	AY050897.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds.
GenBank	AY091298	0.0	AY091298.1 Arabidopsis thaliana putative abscisic acid responsive elements-binding factor (At3g19290) mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623011.1	1e-139	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Swissprot	Q9M7Q2	5e-81	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	M4E0W2	1e-138	M4E0W2_BRARP; Uncharacterized protein
STRING	Bra022409.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27219	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.3	2e-66	ABRE binding factor 4

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]