PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa15g026900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 271aa MW: 30938.7 Da PI: 7.6541

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g026900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.1	4.4e-15	133	222	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h +k ++ ++tl de+ +++ k+ k++ l++GW++F +++L +gD vvF+l+ + f +v Csa15g026900.1 133 FVKPMLQSHVTGGFWLGLPLRFCKTHL-PK-RDEMMTLVDEEDEEFVAKYLAAKTG----LSGGWRGFSIDHQLVDGDAVVFHLIAPTIF--KVY 219 89*******************9994.33.5569***********555555....*********************9986766..777 PP EE- CS B3 96 vfr 98 ++r Csa15g026900.1 220 IIR 222 666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.1E-19	124	223	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.42E-24	126	224	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.02E-24	131	222	No hit	No description
PROSITE profile	PS50863	10.983	133	224	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-13	133	222	IPR003340	B3 DNA binding domain
SMART	SM01019	5.1E-20	133	224	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MVESELSYEQ IRLNRVEENK KRMGELNLSK LAQSLRVSSS PKPSPSKTRT MRTPVDFSEV 60 RRSSRAKGPP PSYKESYLDP YSQFGLEPLE RPRRSYQRRD LLNRVYASDE ARMYAVDKAE 120 TLQSSLDPEF PSFVKPMLQS HVTGGFWLGL PLRFCKTHLP KRDEMMTLVD EEDEEFVAKY 180 LAAKTGLSGG WRGFSIDHQL VDGDAVVFHL IAPTIFKVYI IRVNDDGNND SDGNEEDEEN 240 DIESNKKQEE NVSEARQLRS SGKRKRGGRK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g026900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493621	1e-144	AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBank	DQ487561	1e-144	DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010466051.1	1e-174	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-145	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	R0I040	1e-159	R0I040_9BRAS; Uncharacterized protein
STRING	XP_010487844.1	1e-177	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-120	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]