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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g026630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 162aa MW: 18665.9 Da PI: 11.2324 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.3 | 1.5e-14 | 30 | 114 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk +p +++k++++++p +f++ g++ + +tl+++ g + ++kl ++ ++++++ +GW+eF++a+ +keg f++F++ + s+f Csa15g026630.1 30 FFKLVLP-STMKKDMMRIPPTFVKLQGSN--LPDVVTLKTPVGFKRSIKL--KRIGQEIWFHEGWSEFAEAHSIKEGHFLLFQYYEISSF 114 6666655.5556667********766766..8889***************..*******************************8654655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-17 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 24 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-13 | 28 | 108 | No hit | No description |
PROSITE profile | PS50863 | 10.842 | 29 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-13 | 30 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-13 | 30 | 128 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MVTTRRTKAR VTSSSHRRPP QDPESPVKTF FKLVLPSTMK KDMMRIPPTF VKLQGSNLPD 60 VVTLKTPVGF KRSIKLKRIG QEIWFHEGWS EFAEAHSIKE GHFLLFQYYE ISSFRTKGLL 120 ELKLQGGIIN LLMVVIQNTT PRRDQVTLSL TRFYTVRRLC S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g026630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229681 | 1e-105 | AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20. | |||
GenBank | BT006139 | 1e-105 | BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds. | |||
GenBank | BT008541 | 1e-105 | BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466029.1 | 8e-80 | PREDICTED: B3 domain-containing protein At3g18960-like | ||||
Swissprot | Q84R27 | 2e-64 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | R0GA33 | 2e-63 | R0GA33_9BRAS; Uncharacterized protein | ||||
STRING | XP_010466029.1 | 3e-79 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 9e-67 | B3 family protein |
Publications ? help Back to Top | |||
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