PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 401aa MW: 45102.4 Da PI: 9.5837

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g025250.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.6	8.9e-25	36	83	4	51
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s r ++++kRr++++KKA+ELSvLC+++v+vi+++++g+l+++++ Csa15g025250.1 36 ASSSARATSLIKRRETVFKKANELSVLCGIDVCVIYYGPDGELKTWPK 83 68999*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.2E-11	13	84	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-17	36	116	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.713	37	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-17	37	81	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.14E-17	45	105	No hit	No description
PRINTS	PR00404	9.1E-5	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-5	62	83	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MVSFSSCSPS TSSSTKKDSM RFPQTQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS 60 VLCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYCGLSE RKRRKGCVDL YEFIDKINKD 120 DSKKKQKKPK KEKPVRRVAK VKYPVWDPRF DNYSAEQLSG LVQSLERNLT RLQQRVRAVV 180 EGHGQRKIQY LNMASQGPMM PSTMNQYFQQ QPNQHVSMFL YNHGNGNVSQ IPVSASALNQ 240 GQSLAPVPSE LMIHPNQDVG NYSGSLGGQG TGINGFQNMN MLTYNNINSF NGFSKPIDQN 300 SRVGSYSSLL EDGIDEFEDS HNNFNAEDYS GFLGAQGTVT NGMQNMNMHD YNNNNYNSVN 360 ANGHSHQFGQ FQTQQQHGTF NWDQPGSNFR SLYDLPQPLQ *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MVSFSSCSPS TSSSTKKDSM RFPQTQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS  60
VLCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYCGLSE RKRRKGCVDL YEFIDKINKD  120
DSKKKQKKPK KEKPVRRVAK VKYPVWDPRF DNYSAEQLSG LVQSLERNLT RLQQRVRAVV  180
EGHGQRKIQY LNMASQGPMM PSTMNQYFQQ QPNQHVSMFL YNHGNGNVSQ IPVSASALNQ  240
GQSLAPVPSE LMIHPNQDVG NYSGSLGGQG TGINGFQNMN MLTYNNINSF NGFSKPIDQN  300
SRVGSYSSLL EDGIDEFEDS HNNFNAEDYS GFLGAQGTVT NGMQNMNMHD YNNNNYNSVN  360
ANGHSHQFGQ FQTQQQHGTF NWDQPGSNFR SLYDLPQPLQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	126	RRKGCVDLYEFIDKINKDDSKKKQK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g025250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010468267.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-163	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	R0I855	1e-175	R0I855_9BRAS; Uncharacterized protein
STRING	XP_010468267.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-140	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]