PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g025240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 683aa    MW: 76534.1 Da    PI: 8.7979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g025240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.4e-06228248526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G+C+ G  C+F+H+
  Csa15g025240.1 228 PCK-FLAAGFCRNGKYCRFSHD 248
                     799.6666*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.164223250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MSGLERTCVS KRGSKEETHH HHPSLNANSS SYNHDKESEF NAESNGCRRS DDHHPGEART  60
RSRVSHNNEN SYYSEQDDTR QQFFPRSGSR SNSRSRSRSR SPIYRARRDA GSYDRQHKTR  120
TLVSPTPIRE FNKRGSGHQF DQSNGYGWEY NTRKPRESKY HTDDFRGKAM MKGSRSFEYD  180
TEFPEDYSRN GFSDSRLRRH RSGYTGEKET QRRDGDGGRE FHRSYNIPCK FLAAGFCRNG  240
KYCRFSHDGA DRKQLQDNNF YRQDRNYHSG GHNKWNDVER LDDRRLGGME VSRASKGVTE  300
SKGNGSWIDD MEMSPDWNYG VQSLKNPVKE EHGVVIIGQS SQSRVQSNGM FPHGDKTVVE  360
KPIAASHQSH VHPVNVTPVQ GFSQNHNVLP PYLSSPTPGG SQQVLATAAI DLSVGSNLSN  420
LESGKVNQNN HQSTVEKSVL VQNTVSKEQL DKITNISASI AQFLANRQPI PQLNQALQMP  480
PYSESSMAVQ PNQATTTAVH TQSNVMSSNP TQLMSTGAEG VPAVTALQVS NVDGIQDLTL  540
NPKGCEEKGS KKTDEASKEE EEGKKTGEDT NDAENIVDED VNDDGEGSDE ENKKGKDPKE  600
MLAFKFALVE VVKELLKPAW KEGKMDKDVY KNIVKKVVEK VTVTMQSGNV PQTQEKIDQY  660
LSASKPKLTK LVQAYISKIK KT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g025240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465975.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
SwissprotQ9LIH50.0C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLR0G3V20.0R0G3V2_9BRAS; Uncharacterized protein
STRINGXP_010465975.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-11C3H family protein