PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g024480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 859aa    MW: 97941.3 Da    PI: 5.3558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g024480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08458502246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT+ Ed+ l+  +++ G  +W  Ia  +g++Rt+ qc  r+q 
   Csa15g024480.1 458 GPWTEAEDKNLLLIIEEKGFTDWLDIAVSLGTNRTPFQCLARYQR 502
                      89*****************************************96 PP
2Myb_DNA-binding45.41.9e-14510554146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT eEd++l  avk++G ++W ++a+ +  gRt+ qc +rw k
   Csa15g024480.1 510 KKEWTSEEDDQLRAAVKLFGDNDWQSVANVLK-GRTGPQCSNRWKK 554
                      679****************************9.***********98 PP
3Myb_DNA-binding51.42.4e-16561603144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +grW+ eEd++ + av+++G+ +W++I++ ++ gRt+ qc++rw
   Csa15g024480.1 561 KGRWSLEEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERW 603
                      79******************************.*********** PP
4Myb_DNA-binding40.27.8e-13603642747
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +Ed++ + av+++G+ +W++I++ ++ gRt+ qc++rw + 
   Csa15g024480.1 603 WEDKRVKVAVTLFGSQNWHKISQFVP-GRTATQCRERWVNC 642
                      8*************************.***********986 PP
5Myb_DNA-binding44.34.1e-14649693147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+WT+ Ede+l +a++++G   W+++a+ +   Rt++qc  rw ++
   Csa15g024480.1 649 RGKWTEAEDEKLREAIAKHGYS-WSKVASDLS-CRTDNQCLRRWKTL 693
                      89******************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.623358451IPR017877Myb-like domain
SMARTSM0071738362453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5365381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-5427464IPR009057Homeodomain-like
SuperFamilySSF466898.78E-14435501IPR009057Homeodomain-like
PROSITE profilePS512949.662452504IPR017930Myb domain
SMARTSM007171.5E-8456506IPR001005SANT/Myb domain
PfamPF002493.1E-8458502IPR001005SANT/Myb domain
CDDcd001675.05E-6459504No hitNo description
Gene3DG3DSA:1.10.10.601.2E-12465516IPR009057Homeodomain-like
SuperFamilySSF466894.14E-20489559IPR009057Homeodomain-like
PROSITE profilePS5129421.119505560IPR017930Myb domain
SMARTSM007172.9E-14509558IPR001005SANT/Myb domain
PfamPF002492.8E-12510554IPR001005SANT/Myb domain
CDDcd001672.06E-11512556No hitNo description
Gene3DG3DSA:1.10.10.602.9E-16517558IPR009057Homeodomain-like
SuperFamilySSF466891.04E-12558604IPR009057Homeodomain-like
SMARTSM007171.8E-11560609IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14560604IPR009057Homeodomain-like
PROSITE profilePS5129417.402561611IPR017930Myb domain
PfamPF002492.5E-14561604IPR001005SANT/Myb domain
CDDcd001671.39E-10563603No hitNo description
CDDcd001673.58E-8603641No hitNo description
Gene3DG3DSA:1.10.10.603.0E-16605647IPR009057Homeodomain-like
SMARTSM007172611645IPR001005SANT/Myb domain
PROSITE profilePS500907.131615643IPR017877Myb-like domain
SuperFamilySSF466898.46E-25623698IPR009057Homeodomain-like
PROSITE profilePS5129425.881644698IPR017930Myb domain
SMARTSM007172.8E-12648696IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-19648693IPR009057Homeodomain-like
PfamPF002495.3E-13649693IPR001005SANT/Myb domain
CDDcd001673.84E-10651693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MNRNSLYEAY DDDDDDEEDD IEDFEDIRRA CMVSDANSDQ FAAKTNSIEA DGGGGETMPS  60
DSENEDDFEM LRSINSQFAS SKDSELSSGP PVGLSLPSDS ESEDDFEMIR SITSQLALSM  120
DVPIPPIGLS DDDDDDEDGA FETLRVIRRR FSAYANFDPE GNFMNDSAGK KKQVHDSDNE  180
PSREILSRSN TCESFPDHGK SIVTVPDSED VQDGRSVDVL FNTSAEHHDH LETSQLSLMP  240
ESSTFPEAAQ AFVDAIRKNR AYQKFLRRKL EVLEATIEQN EKHKKNVKIV KDFQASCKRI  300
TKLALVQRKD PRVELISTRK SVPCDSSEGN DKKTYPLLLG PPENPCVADY RMALEKYPVS  360
VERRKWSTQE NKNLAKGLKQ EVQKILLYEA IEQSSDLEGS TYDIDAINES IRNLEITPEM  420
IRQFLPKINW DSLDIKDRSA AECEARWMSS EDPLINHGPW TEAEDKNLLL IIEEKGFTDW  480
LDIAVSLGTN RTPFQCLARY QRSLNASILK KEWTSEEDDQ LRAAVKLFGD NDWQSVANVL  540
KGRTGPQCSN RWKKSLRPTR KGRWSLEEDK RVKVAVTLFG SQNWHKISQF VPGRTATQCR  600
ERWEDKRVKV AVTLFGSQNW HKISQFVPGR TATQCRERWV NCLEPKLNRG KWTEAEDEKL  660
REAIAKHGYS WSKVASDLSC RTDNQCLRRW KTLYPHQVAL LQEARRLRKE AIVGNFVDRE  720
SERPALVTGA ILALPDISPE PEPDSVALKK KGKAKQKKSD AERQPKRRRK RLEKCSGDVC  780
RQENETVREN EPNNGGEERL LEVEPSNEIQ DIAEEKQRRR RKRVAETSNN TTGLKKLTPR  840
RRRKVSAVVP IENQDTPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-244196902159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-244196902159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1764771PKRRRKRL
2820842RKRVAETSNNTTGLKKLTPRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g024480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0338270.0AY033827.1 Arabidopsis thaliana putative transcription factor (MYB4R1) mRNA, complete cds.
GenBankAY0597730.0AY059773.1 Arabidopsis thaliana At3g18100 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465888.10.0PREDICTED: myb-like protein L isoform X1
TrEMBLR0G3G90.0R0G3G9_9BRAS; Uncharacterized protein
STRINGXP_010465887.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1