PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g021000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 415aa    MW: 44998.6 Da    PI: 5.1253
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g021000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-1562100241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++kgC+Ck+skClk+YC+Cfa+g+ C++ C C dC+N+++
  Csa15g021000.1  62 KHKGCRCKQSKCLKLYCDCFASGVVCTD-CDCADCHNNSD 100
                     789*************************.********987 PP
2TCR51.22.5e-16146182440
             TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +gC+Ck+++ClkkYCeCf+a++ Cs++CkC +CkN +
  Csa15g021000.1 146 RGCKCKRTRCLKKYCECFQANVLCSDNCKCIGCKNVS 182
                     79*********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-1661101IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.03862183IPR005172CRC domain
PfamPF036383.2E-126498IPR005172CRC domain
SMARTSM011144.7E-17143184IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-13146181IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTDKVDSGEF ATEKNPKELV STKLELSSLV SDSNVEELPP ISREPSETKD NTDQDGVNTV  60
RKHKGCRCKQ SKCLKLYCDC FASGVVCTDC DCADCHNNSD NSDAREFALK SVLGRNPNAF  120
NGMSFTSLID KQCKDAPDTK LGLLSRGCKC KRTRCLKKYC ECFQANVLCS DNCKCIGCKN  180
VSEVFQPSVF ATGLDNEKLR EGYDNPEKKI VCENIVNSLG IISPSGDSVG FNSSHNTAGS  240
MNSAPGFSAH NSPQRNSCRA PLFLIPDPSI QNALDSPSSP SPKLPYSKKK PPLGYTSTIV  300
PDLGDICSLL LAASESATAN AEDQNRICIK LDDKVGNKCT ELLGESESGN VEEEIQSFGK  360
LIELIDAQYN GEEGSKCKTK TGVHETDISI EQERAVLATF RDCLQKFIKS ILDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-20611839123Protein lin-54 homolog
5fd3_B9e-20611839123Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g021000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019092626.10.0PREDICTED: protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-170TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLD7L5L00.0D7L5L0_ARALL; Predicted protein
STRINGXP_010465624.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-153Tesmin/TSO1-like CXC domain-containing protein