PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g018290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 310aa    MW: 34556.6 Da    PI: 10.1782
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g018290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.3e-32177233158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rakle+++kl +k rkpylheSRh+hAl+R+RgsgGrF
  Csa15g018290.1 177 NEPIYVNAKQYQAILRRRQHRAKLEAQNKL-IKVRKPYLHESRHRHALKRARGSGGRF 233
                     59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-36175236IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.911176236IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-27178233IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-23179201IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860181201IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-23210233IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQEFRSFPCP ATSWDNSVFT NSKLQGSSSV TDNSSLSLTM DMMSTHFPRM KQTGFQLQDH  60
DSSSTQSTGG ESYSEVASLS EPNTRYGRHN IVTHLSGYKE NPENRITSHS KSILSKVSQH  120
SVVLPIEAAS WPLHSTETPH FNDFLSFPYA SQHTMQYPQI GGLVPSRMLL PHNIPENEPI  180
YVNAKQYQAI LRRRQHRAKL EAQNKLIKVR KPYLHESRHR HALKRARGSG GRFLNTKKLQ  240
ESKSPPFSGS PHVFKNSTGK FWQQDIARGG VGSSGSATSC SDITGNNNDM FQQIGLSGYP  300
SNHHVSVLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19178238363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217226RHRHALKRAR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g018290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010465281.10.0PREDICTED: nuclear transcription factor Y subunit A-6-like
RefseqXP_010465282.10.0PREDICTED: nuclear transcription factor Y subunit A-6-like
SwissprotQ9LVJ71e-164NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLD7L2B41e-169D7L2B4_ARALL; Predicted protein
STRINGXP_010465281.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147331620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-155nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]