PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g015020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 267aa    MW: 29767.2 Da    PI: 7.0338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g015020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-083480347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE + + +a + +  +   +W ++a++++ g+t  ++ + + k+
   Csa15g015020.1 34 NWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVLDVMNQYSKL 80
                     8*****************99*************.*********99876 PP
2Myb_DNA-binding39.91e-12131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   Csa15g015020.1 131 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 175
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5173083IPR017884SANT domain
SMARTSM007173.0E-93183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-43279IPR009057Homeodomain-like
SuperFamilySSF466891.36E-113387IPR009057Homeodomain-like
CDDcd001672.20E-83480No hitNo description
PfamPF002498.2E-73479IPR001005SANT/Myb domain
PROSITE profilePS5129419.215124180IPR017930Myb domain
SuperFamilySSF466894.88E-15126179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-11128180IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17128179IPR006447Myb domain, plants
SMARTSM007171.7E-10128178IPR001005SANT/Myb domain
PfamPF002494.3E-10131175IPR001005SANT/Myb domain
CDDcd001674.37E-9131175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
METLHPLSHL PISDHRFVVQ EMMSLHSSSS SGSNWTKEEN KMFERALAIY AEDSPDRWFK  60
VASMIPGKTV LDVMNQYSKL EEDVSDIEAG RVPIPGYPAA SSSPLAFDPD TCRKRPNGAR  120
GSDHDRRKGV PWTEEEHRRF LLGLLKYGKG DWRNISRNFV VSKTPTQVAS HAQKYYQRQL  180
SGAKDKRRPS IHDITTVNLL NANLNRSFSD HSDILPDLGF IDKDNAEDGV IFMGQNLSSE  240
TLFSPSPTSF DAAFSYAGAN AFSARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-172597173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g015020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY0912650.0AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY5503080.0AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464831.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H74e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7L9W11e-176D7L9W1_ARALL; Myb family transcription factor
STRINGXP_010464831.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-171MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]