PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g014780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 256aa    MW: 28903.4 Da    PI: 5.5337
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g014780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93e-1428108286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +Liea  ++  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+  ++        + +fd+l+
  Csa15g014780.1  28 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnasHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------AWCFFDRLD 108
                     *************************************8655666788*******************998886.......488888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2526109No hitNo description
SMARTSM005950.002435115IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
METTPEIHPK PHNQSGSNRL PAGREDWWSE DATATLIEAW GDRYVNLNRG NLRQNDWKEV  60
ADAVNASHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPSSA WCFFDRLDFL IGPVVKKPSG  120
GVVKSALMNP NLNPAGSKST GSSLDDDDDD DDDDDEDDDD AGDWGFVVRK HRRVEDVDPS  180
EGSAFRELAR SILKLGEAFE RIEGKKQRMM IELEKQRMEV AKDLELQRMN MLMEMQLELE  240
KSKLGKRRAS SGKKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g014780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546080.0AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464806.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG82e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0G6K61e-153R0G6K6_9BRAS; Uncharacterized protein
STRINGXP_010464806.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-123sequence-specific DNA binding transcription factors