PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g014730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 28913.2 Da PI: 9.8704 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 50 | 142 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l+++ l lp+ f +++g+++++ +++l +e+g W++ + k +g++++++GW++F+ +n+L+++D++++kl++ +++++v+++++ Csa15g014730.1 50 SRVTASNLRKDSLFLPRGFSRSNGLVNRK-CEIILLNEDGIPWKLIPS-HKPDGEVYIRNGWRSFCFENRLRVNDVLTLKLVE-TGTTPVLHLCS 141 5678999999***************9766.5**************994.34444599***********************998.88889***998 PP S CS B3 99 k 99 + Csa15g014730.1 142 S 142 6 PP | |||||||
2 | B3 | 41.1 | 3.2e-13 | 154 | 246 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvf 97 +++++++k+ l+lp +f++++g+++++ ++tl d+ g + + l+ + k g++ l+k W+eF++ ng++ g+++ ++l+++ ++++ ++k++ Csa15g014730.1 154 TLRPYNFKKYKLCLPGTFVKANGIENAR--KITLVDRYGIRRTTSLKPDDKHGKMRLGKEWREFCDVNGVNIGESFKLELIKErkDTANHLLKFC 246 568999****************988555..8********888888877999999*************************9955344555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-19 | 40 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 41 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-17 | 47 | 141 | No hit | No description |
SMART | SM01019 | 3.6E-24 | 47 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.858 | 47 | 142 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-17 | 49 | 142 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-14 | 143 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-14 | 146 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.36E-11 | 149 | 234 | No hit | No description |
PROSITE profile | PS50863 | 9.996 | 150 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-12 | 150 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-12 | 152 | 247 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MYTLVKLNCN TKILFKFSSK VETDSDSDSE KNQNTADEGS SSDHHSCFVS RVTASNLRKD 60 SLFLPRGFSR SNGLVNRKCE IILLNEDGIP WKLIPSHKPD GEVYIRNGWR SFCFENRLRV 120 NDVLTLKLVE TGTTPVLHLC SSSTTSQCRL LTLTLRPYNF KKYKLCLPGT FVKANGIENA 180 RKITLVDRYG IRRTTSLKPD DKHGKMRLGK EWREFCDVNG VNIGESFKLE LIKERKDTAN 240 HLLKFCSKVL NFP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g014730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488930.1 | 1e-149 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | D7L9U1 | 1e-109 | D7L9U1_ARALL; Uncharacterized protein | ||||
STRING | XP_010488930.1 | 1e-149 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 3e-40 | B3 family protein |