PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 344aa MW: 37061 Da PI: 7.1003

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa15g014310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.4	2.1e-30	109	162	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Csa15g014310.1 109 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 162 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.49E-20	106	166	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	106	165	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-30	108	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-24	110	162	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	112	161	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MREEESDWFA RWEEELPSPE ELMPLSQSLI SPDLALAFDI RSPSHGNNNS NQPHHHHHHQ 60 TTTTTPTTPP SQLQLPSSQA NSSAEFAADS ADLGSGGAAG DEPARTLKRP RLVWTPQLHK 120 RFVDAVAHLG IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SSGGGAGSDP 180 ATDRLFASSP VPAHFLHPNR VPSSDHFMPS FVPIATLQQQ QQMAAAAAAA AAASNPHLQP 240 AQFHHRQIAA AHFGSPTNGG FHSPTSNGQF GSPTSNGFGS PTNGKFDPSF LTRQTQQQQQ 300 QPIHRMSTPS LHSPVGNYVE DLESANANGG GRTVLTLFPT RDD*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MREEESDWFA RWEEELPSPE ELMPLSQSLI SPDLALAFDI RSPSHGNNNS NQPHHHHHHQ  60
TTTTTPTTPP SQLQLPSSQA NSSAEFAADS ADLGSGGAAG DEPARTLKRP RLVWTPQLHK  120
RFVDAVAHLG IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SSGGGAGSDP  180
ATDRLFASSP VPAHFLHPNR VPSSDHFMPS FVPIATLQQQ QQMAAAAAAA AAASNPHLQP  240
AQFHHRQIAA AHFGSPTNGG FHSPTSNGQF GSPTSNGFGS PTNGKFDPSF LTRQTQQQQQ  300
QPIHRMSTPS LHSPVGNYVE DLESANANGG GRTVLTLFPT RDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-32	109	165	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa15g014310.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464753.1	0.0	PREDICTED: transcription factor PCL1-like
Swissprot	O22210	1e-67	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	R0HMQ6	0.0	R0HMQ6_9BRAS; Uncharacterized protein
STRING	XP_010464753.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-140	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]